# SPDX-License-Identifier: BSD-3-Clause
# Copyright (c) 2023 Scipp contributors (https://github.com/scipp)
import scipp as sc
from ..reflectometry.load import load_nx
from ..reflectometry.types import (
DetectorRotation,
Filename,
LoadedNeXusDetector,
NeXusDetectorName,
RawDetectorData,
ReducibleDetectorData,
RunType,
SampleRotation,
)
from .geometry import Detector, pixel_coordinate_in_lab_frame
from .types import (
Chopper1Position,
Chopper2Position,
ChopperFrequency,
ChopperPhase,
RawChopper,
)
[docs]
def load_detector(
file_path: Filename[RunType], detector_name: NeXusDetectorName[RunType]
) -> LoadedNeXusDetector[RunType]:
return next(load_nx(file_path, f"NXentry/NXinstrument/{detector_name}"))
[docs]
def load_events(
detector: LoadedNeXusDetector[RunType], detector_rotation: DetectorRotation[RunType]
) -> RawDetectorData[RunType]:
detector_numbers = sc.arange(
"event_id",
start=1,
stop=(Detector.nBlades * Detector.nWires * Detector.nStripes).value + 1,
unit=None,
dtype="int32",
)
data = (
detector['data']
.bins.constituents["data"]
.group(detector_numbers)
.fold(
"event_id",
sizes={
"blade": Detector.nBlades,
"wire": Detector.nWires,
"stripe": Detector.nStripes,
},
)
)
# Recent versions of scippnexus no longer add variances for events by default, so
# we add them here if they are missing.
if data.bins.constituents["data"].data.variances is None:
data.bins.constituents["data"].data.variances = data.bins.constituents[
"data"
].data.values
pixel_inds = sc.array(dims=data.dims, values=data.coords["event_id"].values - 1)
position, angle_from_center_of_beam = pixel_coordinate_in_lab_frame(
pixelID=pixel_inds, nu=detector_rotation
)
data.coords["position"] = position.to(unit="m", copy=False)
data.coords["angle_from_center_of_beam"] = angle_from_center_of_beam
return RawDetectorData[RunType](data)
[docs]
def compute_tof(
data: RawDetectorData[RunType],
phase: ChopperPhase[RunType],
frequency: ChopperFrequency[RunType],
) -> ReducibleDetectorData[RunType]:
data.bins.coords["tof"] = data.bins.coords.pop("event_time_offset").to(
unit="ns", dtype="float64", copy=False
)
tof_unit = data.bins.coords["tof"].bins.unit
tau = sc.to_unit(1 / (2 * frequency), tof_unit)
tof_offset = tau * phase / (180.0 * sc.units.deg)
event_time_offset = data.bins.coords["tof"]
minimum = -tof_offset
frame_bound = tau - tof_offset
maximum = 2 * tau - tof_offset
offset = sc.where(
(minimum < event_time_offset) & (event_time_offset < frame_bound),
tof_offset,
sc.where(
(frame_bound < event_time_offset) & (event_time_offset < maximum),
tof_offset - tau,
0.0 * tof_unit,
),
)
data.bins.masks["outside_of_pulse"] = (minimum > event_time_offset) | (
event_time_offset > maximum
)
data.bins.coords["tof"] += offset
data.bins.coords["tof"] -= (
data.coords["angle_from_center_of_beam"].to(unit="deg") / (180.0 * sc.units.deg)
) * tau
return ReducibleDetectorData[RunType](data)
[docs]
def amor_chopper(f: Filename[RunType]) -> RawChopper[RunType]:
return next(load_nx(f, "NXentry/NXinstrument/NXdisk_chopper"))
[docs]
def load_amor_chopper_1_position(ch: RawChopper[RunType]) -> Chopper1Position[RunType]:
# We know the value has unit 'mm'
return sc.vector([0, 0, ch["distance"] - ch["pair_separation"] / 2], unit="mm").to(
unit="m"
)
[docs]
def load_amor_chopper_2_position(ch: RawChopper[RunType]) -> Chopper2Position[RunType]:
# We know the value has unit 'mm'
return sc.vector([0, 0, ch["distance"] + ch["pair_separation"] / 2], unit="mm").to(
unit="m"
)
[docs]
def load_amor_ch_phase(ch: RawChopper[RunType]) -> ChopperPhase[RunType]:
p = ch["phase"]["value"].coords["average_value"].value
if getattr(p, "unit", None):
return p
raise ValueError("No unit was found for the chopper phase")
[docs]
def load_amor_ch_frequency(ch: RawChopper[RunType]) -> ChopperFrequency[RunType]:
f = ch["rotation_speed"]["value"].coords["average_value"]
if getattr(f, "unit", None):
return f
raise ValueError("No unit was found for the chopper frequency")
[docs]
def load_amor_sample_rotation(fp: Filename[RunType]) -> SampleRotation[RunType]:
(mu,) = load_nx(fp, "NXentry/NXinstrument/master_parameters/mu")
# Jochens Amor code reads the first value of this log
# see https://github.com/jochenstahn/amor/blob/140e3192ddb7e7f28acee87e2acaee65ce1332aa/libeos/file_reader.py#L272 # noqa: E501
# might have to change if this field ever becomes truly time-dependent
return sc.scalar(mu['value'].data['dim_1', 0]['time', 0].value, unit='deg')
[docs]
def load_amor_detector_rotation(fp: Filename[RunType]) -> DetectorRotation[RunType]:
(nu,) = load_nx(fp, "NXentry/NXinstrument/master_parameters/nu")
# Jochens Amor code reads the first value of this log
# see https://github.com/jochenstahn/amor/blob/140e3192ddb7e7f28acee87e2acaee65ce1332aa/libeos/file_reader.py#L272 # noqa: E501
# might have to change if this field ever becomes truly time-dependent
return sc.scalar(nu['value'].data['dim_1', 0]['time', 0].value, unit='deg')
providers = (
load_detector,
load_events,
compute_tof,
load_amor_ch_frequency,
load_amor_ch_phase,
load_amor_chopper_1_position,
load_amor_chopper_2_position,
load_amor_sample_rotation,
load_amor_detector_rotation,
amor_chopper,
)
