ess.imaging.normalize

Module Attributes

AverageBackgroundPixelCounts	mean(background).
AverageSamplePixelCounts	mean(sample).
ScaleFactor	AverageBackgroundPixelCounts / AverageSamplePixelCounts.
OpenBeamImage	Open beam image.
DarkCurrentImage	Dark current image.
CleansedOpenBeamImage	OpenBeam - DarkCrrent
CleansedSampleImages	SampleImageStack - DarkCurrent
SampleImageStacks	Sample image stack ready to be used for normalization.
BackgroundImage	Background image ready to be used for normalization.
NormalizedSampleImages	Normalized sample image stack.
BackgroundPixelThreshold	Threshold of the background pixel values.
SamplePixelThreshold	Threshold of the sample pixel values.

Functions

apply_threshold_to_background_image(...)	Apply the threshold to the background image.
apply_threshold_to_sample_images(samples, ...)	Apply the threshold to the sample image stack.
average_background_pixel_counts(background)	Calculate the average background pixel counts.
average_dark_current_images(dark_current)	Average the dark current image stack.
average_open_beam_images(open_beam)	Average the open beam image stack.
average_sample_pixel_counts(sample_images)	Calculate the average sample pixel counts.
calculate_scale_factor(average_bg, ...)	Calculate the scale factor from average background and sample pixel counts.
cleanse_open_beam_image(open_beam, dark_current)	Calculate the background image stack.
cleanse_sample_images(sample_images, ...)	Cleanse the sample image stack.
normalize_sample_images(*, samples, ...)	Normalize the sample image stack.