IO#

Export Tiff Image with Meta Data#

[1]:

from scitiff.data import hyperstack_example
import scipp as sc

sample_img = hyperstack_example()
sample_img

[1]:
Show/Hide data repr Show/Hide attributes
scipp.DataArray (10.99 MB)
    • c: 3
    • t: 4
    • z: 2
    • y: 300
    • x: 400
    • c
      (c)
      string
      R, G, B
      Values:
      ["R", "G", "B"]
    • t
      (t)
      int64
      s
      0, 1, 2, 3
      Values:
      array([0, 1, 2, 3])
    • x
      (x)
      float64
      mm
      0.0, 1.003, ..., 398.997, 400.0
      Values:
      array([  0.        ,   1.00250627,   2.00501253,   3.0075188 ,
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         8.02005013,   9.02255639,  10.02506266,  11.02756892,
        12.03007519,  13.03258145,  14.03508772,  15.03759398,
        16.04010025,  17.04260652,  18.04511278,  19.04761905,
        20.05012531,  21.05263158,  22.05513784,  23.05764411,
        24.06015038,  25.06265664,  26.06516291,  27.06766917,
        28.07017544,  29.0726817 ,  30.07518797,  31.07769424,
        32.0802005 ,  33.08270677,  34.08521303,  35.0877193 ,
        36.09022556,  37.09273183,  38.0952381 ,  39.09774436,
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        72.18045113,  73.18295739,  74.18546366,  75.18796992,
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        96.2406015 ,  97.24310777,  98.24561404,  99.2481203 ,
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       168.42105263, 169.4235589 , 170.42606516, 171.42857143,
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       196.49122807, 197.49373434, 198.4962406 , 199.49874687,
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       328.82205514, 329.8245614 , 330.82706767, 331.82957393,
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       364.9122807 , 365.91478697, 366.91729323, 367.9197995 ,
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       392.98245614, 393.98496241, 394.98746867, 395.98997494,
       396.9924812 , 397.99498747, 398.99749373, 400.        ])
    • y
      (y)
      float64
      mm
      0.0, 1.003, ..., 298.997, 300.0
      Values:
      array([  0.        ,   1.00334448,   2.00668896,   3.01003344,
         4.01337793,   5.01672241,   6.02006689,   7.02341137,
         8.02675585,   9.03010033,  10.03344482,  11.0367893 ,
        12.04013378,  13.04347826,  14.04682274,  15.05016722,
        16.05351171,  17.05685619,  18.06020067,  19.06354515,
        20.06688963,  21.07023411,  22.0735786 ,  23.07692308,
        24.08026756,  25.08361204,  26.08695652,  27.090301  ,
        28.09364548,  29.09698997,  30.10033445,  31.10367893,
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        36.12040134,  37.12374582,  38.1270903 ,  39.13043478,
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        44.14715719,  45.15050167,  46.15384615,  47.15719064,
        48.16053512,  49.1638796 ,  50.16722408,  51.17056856,
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        60.2006689 ,  61.20401338,  62.20735786,  63.21070234,
        64.21404682,  65.2173913 ,  66.22073579,  67.22408027,
        68.22742475,  69.23076923,  70.23411371,  71.23745819,
        72.24080268,  73.24414716,  74.24749164,  75.25083612,
        76.2541806 ,  77.25752508,  78.26086957,  79.26421405,
        80.26755853,  81.27090301,  82.27424749,  83.27759197,
        84.28093645,  85.28428094,  86.28762542,  87.2909699 ,
        88.29431438,  89.29765886,  90.30100334,  91.30434783,
        92.30769231,  93.31103679,  94.31438127,  95.31772575,
        96.32107023,  97.32441472,  98.3277592 ,  99.33110368,
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       172.57525084, 173.57859532, 174.5819398 , 175.58528428,
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       192.64214047, 193.64548495, 194.64882943, 195.65217391,
       196.65551839, 197.65886288, 198.66220736, 199.66555184,
       200.66889632, 201.6722408 , 202.67558528, 203.67892977,
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       212.7090301 , 213.71237458, 214.71571906, 215.71906355,
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       220.73578595, 221.73913043, 222.74247492, 223.7458194 ,
       224.74916388, 225.75250836, 226.75585284, 227.75919732,
       228.76254181, 229.76588629, 230.76923077, 231.77257525,
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       236.78929766, 237.79264214, 238.79598662, 239.7993311 ,
       240.80267559, 241.80602007, 242.80936455, 243.81270903,
       244.81605351, 245.81939799, 246.82274247, 247.82608696,
       248.82943144, 249.83277592, 250.8361204 , 251.83946488,
       252.84280936, 253.84615385, 254.84949833, 255.85284281,
       256.85618729, 257.85953177, 258.86287625, 259.86622074,
       260.86956522, 261.8729097 , 262.87625418, 263.87959866,
       264.88294314, 265.88628763, 266.88963211, 267.89297659,
       268.89632107, 269.89966555, 270.90301003, 271.90635452,
       272.909699  , 273.91304348, 274.91638796, 275.91973244,
       276.92307692, 277.9264214 , 278.92976589, 279.93311037,
       280.93645485, 281.93979933, 282.94314381, 283.94648829,
       284.94983278, 285.95317726, 286.95652174, 287.95986622,
       288.9632107 , 289.96655518, 290.96989967, 291.97324415,
       292.97658863, 293.97993311, 294.98327759, 295.98662207,
       296.98996656, 297.99331104, 298.99665552, 300.        ])
    • z
      (z)
      int64
      mm
      10, 20
      Values:
      array([10, 20])
    • (c, t, z, y, x)
      float32
      counts
      0.0, 1.0, ..., 89998.0, 89999.0
      Values:
      array([[[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
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          ...,
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           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]],

         [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]]],


        [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]],

         [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]]],


        [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
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          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]],

         [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]]],


        [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]],

         [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]]]],



       [[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]],

         [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]]],


        [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]],

         [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]]],


        [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]],

         [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]]],


        [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]],

         [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]]]],



       [[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]],

         [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]]],


        [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]],

         [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]]],


        [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]],

         [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]]],


        [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]],

         [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]]]]],
      shape=(3, 4, 2, 300, 400), dtype=float32)
[2]:

config = {"grid": True, "aspect": True}
img = sample_img.mean('c').mean('z')
(img['t', 0].plot(title='T=0', **config) + img['t', 1].plot(title='T=1', **config)) / (
    img['t', 2].plot(title='T=2', **config) + img['t', 3].plot(title='T=3', **config)
)

[2]:
../_images/user-guide_io_2_0.svg 
[3]:

from scitiff.io import save_scitiff

save_scitiff(sample_img, 'sample_img.tiff')

Load TIFF Image with Meta Data#

[4]:

from scitiff.io import load_scitiff

loaded_scitiff: sc.DataGroup[sc.DataArray] = load_scitiff('sample_img.tiff')
loaded_scitiff

[4]:
  • image
    scipp
    DataArray
    (t: 4, z: 2, c: 3, y: 300, x: 400)
    float32
    counts
    0.0, 1.0, ..., 89998.0, 89999.0
[5]:

loaded_scitiff['image']

[5]:
Show/Hide data repr Show/Hide attributes
scipp.DataArray (10.99 MB)
    • t: 4
    • z: 2
    • c: 3
    • y: 300
    • x: 400
    • c
      (c)
      string
      R, G, B
      Values:
      ["R", "G", "B"]
    • t
      (t)
      int64
      s
      0, 1, 2, 3
      Values:
      array([0, 1, 2, 3])
    • x
      (x)
      float64
      mm
      0.0, 1.003, ..., 398.997, 400.0
      Values:
      array([  0.        ,   1.00250627,   2.00501253,   3.0075188 ,
         4.01002506,   5.01253133,   6.01503759,   7.01754386,
         8.02005013,   9.02255639,  10.02506266,  11.02756892,
        12.03007519,  13.03258145,  14.03508772,  15.03759398,
        16.04010025,  17.04260652,  18.04511278,  19.04761905,
        20.05012531,  21.05263158,  22.05513784,  23.05764411,
        24.06015038,  25.06265664,  26.06516291,  27.06766917,
        28.07017544,  29.0726817 ,  30.07518797,  31.07769424,
        32.0802005 ,  33.08270677,  34.08521303,  35.0877193 ,
        36.09022556,  37.09273183,  38.0952381 ,  39.09774436,
        40.10025063,  41.10275689,  42.10526316,  43.10776942,
        44.11027569,  45.11278195,  46.11528822,  47.11779449,
        48.12030075,  49.12280702,  50.12531328,  51.12781955,
        52.13032581,  53.13283208,  54.13533835,  55.13784461,
        56.14035088,  57.14285714,  58.14536341,  59.14786967,
        60.15037594,  61.15288221,  62.15538847,  63.15789474,
        64.160401  ,  65.16290727,  66.16541353,  67.1679198 ,
        68.17042607,  69.17293233,  70.1754386 ,  71.17794486,
        72.18045113,  73.18295739,  74.18546366,  75.18796992,
        76.19047619,  77.19298246,  78.19548872,  79.19799499,
        80.20050125,  81.20300752,  82.20551378,  83.20802005,
        84.21052632,  85.21303258,  86.21553885,  87.21804511,
        88.22055138,  89.22305764,  90.22556391,  91.22807018,
        92.23057644,  93.23308271,  94.23558897,  95.23809524,
        96.2406015 ,  97.24310777,  98.24561404,  99.2481203 ,
       100.25062657, 101.25313283, 102.2556391 , 103.25814536,
       104.26065163, 105.26315789, 106.26566416, 107.26817043,
       108.27067669, 109.27318296, 110.27568922, 111.27819549,
       112.28070175, 113.28320802, 114.28571429, 115.28822055,
       116.29072682, 117.29323308, 118.29573935, 119.29824561,
       120.30075188, 121.30325815, 122.30576441, 123.30827068,
       124.31077694, 125.31328321, 126.31578947, 127.31829574,
       128.32080201, 129.32330827, 130.32581454, 131.3283208 ,
       132.33082707, 133.33333333, 134.3358396 , 135.33834586,
       136.34085213, 137.3433584 , 138.34586466, 139.34837093,
       140.35087719, 141.35338346, 142.35588972, 143.35839599,
       144.36090226, 145.36340852, 146.36591479, 147.36842105,
       148.37092732, 149.37343358, 150.37593985, 151.37844612,
       152.38095238, 153.38345865, 154.38596491, 155.38847118,
       156.39097744, 157.39348371, 158.39598997, 159.39849624,
       160.40100251, 161.40350877, 162.40601504, 163.4085213 ,
       164.41102757, 165.41353383, 166.4160401 , 167.41854637,
       168.42105263, 169.4235589 , 170.42606516, 171.42857143,
       172.43107769, 173.43358396, 174.43609023, 175.43859649,
       176.44110276, 177.44360902, 178.44611529, 179.44862155,
       180.45112782, 181.45363409, 182.45614035, 183.45864662,
       184.46115288, 185.46365915, 186.46616541, 187.46867168,
       188.47117794, 189.47368421, 190.47619048, 191.47869674,
       192.48120301, 193.48370927, 194.48621554, 195.4887218 ,
       196.49122807, 197.49373434, 198.4962406 , 199.49874687,
       200.50125313, 201.5037594 , 202.50626566, 203.50877193,
       204.5112782 , 205.51378446, 206.51629073, 207.51879699,
       208.52130326, 209.52380952, 210.52631579, 211.52882206,
       212.53132832, 213.53383459, 214.53634085, 215.53884712,
       216.54135338, 217.54385965, 218.54636591, 219.54887218,
       220.55137845, 221.55388471, 222.55639098, 223.55889724,
       224.56140351, 225.56390977, 226.56641604, 227.56892231,
       228.57142857, 229.57393484, 230.5764411 , 231.57894737,
       232.58145363, 233.5839599 , 234.58646617, 235.58897243,
       236.5914787 , 237.59398496, 238.59649123, 239.59899749,
       240.60150376, 241.60401003, 242.60651629, 243.60902256,
       244.61152882, 245.61403509, 246.61654135, 247.61904762,
       248.62155388, 249.62406015, 250.62656642, 251.62907268,
       252.63157895, 253.63408521, 254.63659148, 255.63909774,
       256.64160401, 257.64411028, 258.64661654, 259.64912281,
       260.65162907, 261.65413534, 262.6566416 , 263.65914787,
       264.66165414, 265.6641604 , 266.66666667, 267.66917293,
       268.6716792 , 269.67418546, 270.67669173, 271.67919799,
       272.68170426, 273.68421053, 274.68671679, 275.68922306,
       276.69172932, 277.69423559, 278.69674185, 279.69924812,
       280.70175439, 281.70426065, 282.70676692, 283.70927318,
       284.71177945, 285.71428571, 286.71679198, 287.71929825,
       288.72180451, 289.72431078, 290.72681704, 291.72932331,
       292.73182957, 293.73433584, 294.73684211, 295.73934837,
       296.74185464, 297.7443609 , 298.74686717, 299.74937343,
       300.7518797 , 301.75438596, 302.75689223, 303.7593985 ,
       304.76190476, 305.76441103, 306.76691729, 307.76942356,
       308.77192982, 309.77443609, 310.77694236, 311.77944862,
       312.78195489, 313.78446115, 314.78696742, 315.78947368,
       316.79197995, 317.79448622, 318.79699248, 319.79949875,
       320.80200501, 321.80451128, 322.80701754, 323.80952381,
       324.81203008, 325.81453634, 326.81704261, 327.81954887,
       328.82205514, 329.8245614 , 330.82706767, 331.82957393,
       332.8320802 , 333.83458647, 334.83709273, 335.839599  ,
       336.84210526, 337.84461153, 338.84711779, 339.84962406,
       340.85213033, 341.85463659, 342.85714286, 343.85964912,
       344.86215539, 345.86466165, 346.86716792, 347.86967419,
       348.87218045, 349.87468672, 350.87719298, 351.87969925,
       352.88220551, 353.88471178, 354.88721805, 355.88972431,
       356.89223058, 357.89473684, 358.89724311, 359.89974937,
       360.90225564, 361.9047619 , 362.90726817, 363.90977444,
       364.9122807 , 365.91478697, 366.91729323, 367.9197995 ,
       368.92230576, 369.92481203, 370.9273183 , 371.92982456,
       372.93233083, 373.93483709, 374.93734336, 375.93984962,
       376.94235589, 377.94486216, 378.94736842, 379.94987469,
       380.95238095, 381.95488722, 382.95739348, 383.95989975,
       384.96240602, 385.96491228, 386.96741855, 387.96992481,
       388.97243108, 389.97493734, 390.97744361, 391.97994987,
       392.98245614, 393.98496241, 394.98746867, 395.98997494,
       396.9924812 , 397.99498747, 398.99749373, 400.        ])
    • y
      (y)
      float64
      mm
      0.0, 1.003, ..., 298.997, 300.0
      Values:
      array([  0.        ,   1.00334448,   2.00668896,   3.01003344,
         4.01337793,   5.01672241,   6.02006689,   7.02341137,
         8.02675585,   9.03010033,  10.03344482,  11.0367893 ,
        12.04013378,  13.04347826,  14.04682274,  15.05016722,
        16.05351171,  17.05685619,  18.06020067,  19.06354515,
        20.06688963,  21.07023411,  22.0735786 ,  23.07692308,
        24.08026756,  25.08361204,  26.08695652,  27.090301  ,
        28.09364548,  29.09698997,  30.10033445,  31.10367893,
        32.10702341,  33.11036789,  34.11371237,  35.11705686,
        36.12040134,  37.12374582,  38.1270903 ,  39.13043478,
        40.13377926,  41.13712375,  42.14046823,  43.14381271,
        44.14715719,  45.15050167,  46.15384615,  47.15719064,
        48.16053512,  49.1638796 ,  50.16722408,  51.17056856,
        52.17391304,  53.17725753,  54.18060201,  55.18394649,
        56.18729097,  57.19063545,  58.19397993,  59.19732441,
        60.2006689 ,  61.20401338,  62.20735786,  63.21070234,
        64.21404682,  65.2173913 ,  66.22073579,  67.22408027,
        68.22742475,  69.23076923,  70.23411371,  71.23745819,
        72.24080268,  73.24414716,  74.24749164,  75.25083612,
        76.2541806 ,  77.25752508,  78.26086957,  79.26421405,
        80.26755853,  81.27090301,  82.27424749,  83.27759197,
        84.28093645,  85.28428094,  86.28762542,  87.2909699 ,
        88.29431438,  89.29765886,  90.30100334,  91.30434783,
        92.30769231,  93.31103679,  94.31438127,  95.31772575,
        96.32107023,  97.32441472,  98.3277592 ,  99.33110368,
       100.33444816, 101.33779264, 102.34113712, 103.34448161,
       104.34782609, 105.35117057, 106.35451505, 107.35785953,
       108.36120401, 109.36454849, 110.36789298, 111.37123746,
       112.37458194, 113.37792642, 114.3812709 , 115.38461538,
       116.38795987, 117.39130435, 118.39464883, 119.39799331,
       120.40133779, 121.40468227, 122.40802676, 123.41137124,
       124.41471572, 125.4180602 , 126.42140468, 127.42474916,
       128.42809365, 129.43143813, 130.43478261, 131.43812709,
       132.44147157, 133.44481605, 134.44816054, 135.45150502,
       136.4548495 , 137.45819398, 138.46153846, 139.46488294,
       140.46822742, 141.47157191, 142.47491639, 143.47826087,
       144.48160535, 145.48494983, 146.48829431, 147.4916388 ,
       148.49498328, 149.49832776, 150.50167224, 151.50501672,
       152.5083612 , 153.51170569, 154.51505017, 155.51839465,
       156.52173913, 157.52508361, 158.52842809, 159.53177258,
       160.53511706, 161.53846154, 162.54180602, 163.5451505 ,
       164.54849498, 165.55183946, 166.55518395, 167.55852843,
       168.56187291, 169.56521739, 170.56856187, 171.57190635,
       172.57525084, 173.57859532, 174.5819398 , 175.58528428,
       176.58862876, 177.59197324, 178.59531773, 179.59866221,
       180.60200669, 181.60535117, 182.60869565, 183.61204013,
       184.61538462, 185.6187291 , 186.62207358, 187.62541806,
       188.62876254, 189.63210702, 190.63545151, 191.63879599,
       192.64214047, 193.64548495, 194.64882943, 195.65217391,
       196.65551839, 197.65886288, 198.66220736, 199.66555184,
       200.66889632, 201.6722408 , 202.67558528, 203.67892977,
       204.68227425, 205.68561873, 206.68896321, 207.69230769,
       208.69565217, 209.69899666, 210.70234114, 211.70568562,
       212.7090301 , 213.71237458, 214.71571906, 215.71906355,
       216.72240803, 217.72575251, 218.72909699, 219.73244147,
       220.73578595, 221.73913043, 222.74247492, 223.7458194 ,
       224.74916388, 225.75250836, 226.75585284, 227.75919732,
       228.76254181, 229.76588629, 230.76923077, 231.77257525,
       232.77591973, 233.77926421, 234.7826087 , 235.78595318,
       236.78929766, 237.79264214, 238.79598662, 239.7993311 ,
       240.80267559, 241.80602007, 242.80936455, 243.81270903,
       244.81605351, 245.81939799, 246.82274247, 247.82608696,
       248.82943144, 249.83277592, 250.8361204 , 251.83946488,
       252.84280936, 253.84615385, 254.84949833, 255.85284281,
       256.85618729, 257.85953177, 258.86287625, 259.86622074,
       260.86956522, 261.8729097 , 262.87625418, 263.87959866,
       264.88294314, 265.88628763, 266.88963211, 267.89297659,
       268.89632107, 269.89966555, 270.90301003, 271.90635452,
       272.909699  , 273.91304348, 274.91638796, 275.91973244,
       276.92307692, 277.9264214 , 278.92976589, 279.93311037,
       280.93645485, 281.93979933, 282.94314381, 283.94648829,
       284.94983278, 285.95317726, 286.95652174, 287.95986622,
       288.9632107 , 289.96655518, 290.96989967, 291.97324415,
       292.97658863, 293.97993311, 294.98327759, 295.98662207,
       296.98996656, 297.99331104, 298.99665552, 300.        ])
    • z
      (z)
      int64
      mm
      10, 20
      Values:
      array([10, 20])
    • (t, z, c, y, x)
      float32
      counts
      0.0, 1.0, ..., 89998.0, 89999.0
      Values:
      array([[[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]],

         [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]],

         [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]]],


        [[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]],

         [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]],

         [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]]]],



       [[[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]],

         [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]],

         [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]]],


        [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]],

         [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]],

         [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]]]],



       [[[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]],

         [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]],

         [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]]],


        [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]],

         [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]],

         [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]]]],



       [[[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]],

         [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]],

         [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]]],


        [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]],

         [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]],

         [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]]]]],
      shape=(4, 2, 3, 300, 400), dtype=float32)
[6]:

config = {"grid": True, "aspect": True}
loaded_img = loaded_scitiff['image'].mean('c').mean('z')
(
    loaded_img['t', 0].plot(title='T=0', **config)
    + loaded_img['t', 1].plot(title='T=1', **config)
) / (
    loaded_img['t', 2].plot(title='T=2', **config)
    + loaded_img['t', 3].plot(title='T=3', **config)
)

[6]:
../_images/user-guide_io_7_0.svg

Load Non-Scitiff Images#

Sometimes you might want to load tiff images that are not compatible with scitiff. i.e. no metadata, incompatible dtype, or broken metadata with wrong fields or values.

load_scitiff will try to load metadata and handle incompatible profiles, but if it is not possible it will load the tiff image as it is and wrap it into scipp data structure.

Note

load_scitiff will throw warning if it fails to load the file as expected way so please pay attention to the warning messages.

[7]:

import tifffile as tf

tf.imwrite('no-meta.tiff', data=sample_img.values)
no_meta_loaded_image = load_scitiff('no-meta.tiff')['image']
display(no_meta_loaded_image)
no_meta_loaded_image_reduced = no_meta_loaded_image.sum('dim_0').sum('dim_2')
(
    no_meta_loaded_image_reduced['dim_1', 0].plot(title='dim_1=0', **config)
    + no_meta_loaded_image_reduced['dim_1', 1].plot(title='dim_1=1', **config)
) / (
    no_meta_loaded_image_reduced['dim_1', 2].plot(title='dim_1=2', **config)
    + no_meta_loaded_image_reduced['dim_1', 3].plot(title='dim_1=3', **config)
)

/tmp/ipykernel_3028/3829974585.py:4: ImageJMetadataNotFoundWarning: ImageJ metadata not found in the tiff file.
Loading the image with arbitrary dimensions...

  no_meta_loaded_image = load_scitiff('no-meta.tiff')['image']
Show/Hide data repr Show/Hide attributes
scipp.DataArray (10.99 MB)
    • dim_0: 3
    • dim_1: 4
    • dim_2: 2
    • dim_3: 300
    • dim_4: 400
    • (dim_0, dim_1, dim_2, dim_3, dim_4)
      float32
      𝟙
      0.0, 1.0, ..., 89998.0, 89999.0
      Values:
      array([[[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]],

         [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]]],


        [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]],

         [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]]],


        [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]],

         [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]]],


        [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]],

         [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]]]],



       [[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]],

         [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]]],


        [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]],

         [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]]],


        [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]],

         [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]]],


        [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]],

         [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]]]],



       [[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]],

         [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]]],


        [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]],

         [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]]],


        [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]],

         [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]]],


        [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]],

         [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]]]]],
      shape=(3, 4, 2, 300, 400), dtype=float32)
[7]:
../_images/user-guide_io_9_2.svg

Tip

You can rename the dimensions and use it just like other scitiff images. Do it only if you know which dim_{i} corresponds to which of (‘t’, ‘z’, ‘c’, ‘y’, ‘x’).

[8]:

renamed_image = no_meta_loaded_image.rename_dims({
    "dim_0": "c", "dim_1": "t", "dim_2": "z", "dim_3": "y", "dim_4": "x"
})
display(renamed_image)
renamed_image_reduced = renamed_image.sum('z').sum('c')
(
    renamed_image_reduced['t', 0].plot(title='T=0', **config)
    + renamed_image_reduced['t', 1].plot(title='T=1', **config)
) / (
    renamed_image_reduced['t', 2].plot(title='T=2', **config)
    + renamed_image_reduced['t', 3].plot(title='T=3', **config)
)
Show/Hide data repr Show/Hide attributes
scipp.DataArray (10.99 MB)
    • c: 3
    • t: 4
    • z: 2
    • y: 300
    • x: 400
    • (c, t, z, y, x)
      float32
      𝟙
      0.0, 1.0, ..., 89998.0, 89999.0
      Values:
      array([[[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]],

         [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]]],


        [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]],

         [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]]],


        [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]],

         [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]]],


        [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]],

         [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]]]],



       [[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]],

         [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]]],


        [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]],

         [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]]],


        [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]],

         [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]]],


        [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]],

         [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]]]],



       [[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]],

         [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02,
           3.98000e+02, 3.99000e+02],
          [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02,
           7.98000e+02, 7.99000e+02],
          [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03,
           1.19800e+03, 1.19900e+03],
          ...,
          [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05,
           1.19198e+05, 1.19199e+05],
          [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05,
           1.19598e+05, 1.19599e+05],
          [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05,
           1.19998e+05, 1.19999e+05]]],


        [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]],

         [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04,
           3.03980e+04, 3.03990e+04],
          [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04,
           3.07980e+04, 3.07990e+04],
          [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04,
           3.11980e+04, 3.11990e+04],
          ...,
          [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04,
           2.91980e+04, 2.91990e+04],
          [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04,
           2.95980e+04, 2.95990e+04],
          [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04,
           2.99980e+04, 2.99990e+04]]],


        [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]],

         [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04,
           6.03980e+04, 6.03990e+04],
          [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04,
           6.07980e+04, 6.07990e+04],
          [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04,
           6.11980e+04, 6.11990e+04],
          ...,
          [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04,
           5.91980e+04, 5.91990e+04],
          [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04,
           5.95980e+04, 5.95990e+04],
          [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04,
           5.99980e+04, 5.99990e+04]]],


        [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]],

         [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04,
           9.03980e+04, 9.03990e+04],
          [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04,
           9.07980e+04, 9.07990e+04],
          [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04,
           9.11980e+04, 9.11990e+04],
          ...,
          [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04,
           8.91980e+04, 8.91990e+04],
          [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04,
           8.95980e+04, 8.95990e+04],
          [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04,
           8.99980e+04, 8.99990e+04]]]]],
      shape=(3, 4, 2, 300, 400), dtype=float32)
[8]:
../_images/user-guide_io_11_1.svg