IO#
Export Tiff Image with Meta Data#
[1]:
from scitiff.data import hyperstack_example
import scipp as sc
sample_img = hyperstack_example()
sample_img
[1]:
scipp.DataArray (10.99 MB)
- c: 3
- t: 4
- z: 2
- y: 300
- x: 400
- c(c)stringR, G, B
Values:
["R", "G", "B"] - t(t)int64s0, 1, 2, 3
Values:
array([0, 1, 2, 3]) - x(x)float64mm0.0, 1.003, ..., 398.997, 400.0
Values:
array([ 0. , 1.00250627, 2.00501253, 3.0075188 , 4.01002506, 5.01253133, 6.01503759, 7.01754386, 8.02005013, 9.02255639, 10.02506266, 11.02756892, 12.03007519, 13.03258145, 14.03508772, 15.03759398, 16.04010025, 17.04260652, 18.04511278, 19.04761905, 20.05012531, 21.05263158, 22.05513784, 23.05764411, 24.06015038, 25.06265664, 26.06516291, 27.06766917, 28.07017544, 29.0726817 , 30.07518797, 31.07769424, 32.0802005 , 33.08270677, 34.08521303, 35.0877193 , 36.09022556, 37.09273183, 38.0952381 , 39.09774436, 40.10025063, 41.10275689, 42.10526316, 43.10776942, 44.11027569, 45.11278195, 46.11528822, 47.11779449, 48.12030075, 49.12280702, 50.12531328, 51.12781955, 52.13032581, 53.13283208, 54.13533835, 55.13784461, 56.14035088, 57.14285714, 58.14536341, 59.14786967, 60.15037594, 61.15288221, 62.15538847, 63.15789474, 64.160401 , 65.16290727, 66.16541353, 67.1679198 , 68.17042607, 69.17293233, 70.1754386 , 71.17794486, 72.18045113, 73.18295739, 74.18546366, 75.18796992, 76.19047619, 77.19298246, 78.19548872, 79.19799499, 80.20050125, 81.20300752, 82.20551378, 83.20802005, 84.21052632, 85.21303258, 86.21553885, 87.21804511, 88.22055138, 89.22305764, 90.22556391, 91.22807018, 92.23057644, 93.23308271, 94.23558897, 95.23809524, 96.2406015 , 97.24310777, 98.24561404, 99.2481203 , 100.25062657, 101.25313283, 102.2556391 , 103.25814536, 104.26065163, 105.26315789, 106.26566416, 107.26817043, 108.27067669, 109.27318296, 110.27568922, 111.27819549, 112.28070175, 113.28320802, 114.28571429, 115.28822055, 116.29072682, 117.29323308, 118.29573935, 119.29824561, 120.30075188, 121.30325815, 122.30576441, 123.30827068, 124.31077694, 125.31328321, 126.31578947, 127.31829574, 128.32080201, 129.32330827, 130.32581454, 131.3283208 , 132.33082707, 133.33333333, 134.3358396 , 135.33834586, 136.34085213, 137.3433584 , 138.34586466, 139.34837093, 140.35087719, 141.35338346, 142.35588972, 143.35839599, 144.36090226, 145.36340852, 146.36591479, 147.36842105, 148.37092732, 149.37343358, 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363.90977444, 364.9122807 , 365.91478697, 366.91729323, 367.9197995 , 368.92230576, 369.92481203, 370.9273183 , 371.92982456, 372.93233083, 373.93483709, 374.93734336, 375.93984962, 376.94235589, 377.94486216, 378.94736842, 379.94987469, 380.95238095, 381.95488722, 382.95739348, 383.95989975, 384.96240602, 385.96491228, 386.96741855, 387.96992481, 388.97243108, 389.97493734, 390.97744361, 391.97994987, 392.98245614, 393.98496241, 394.98746867, 395.98997494, 396.9924812 , 397.99498747, 398.99749373, 400. ]) - y(y)float64mm0.0, 1.003, ..., 298.997, 300.0
Values:
array([ 0. , 1.00334448, 2.00668896, 3.01003344, 4.01337793, 5.01672241, 6.02006689, 7.02341137, 8.02675585, 9.03010033, 10.03344482, 11.0367893 , 12.04013378, 13.04347826, 14.04682274, 15.05016722, 16.05351171, 17.05685619, 18.06020067, 19.06354515, 20.06688963, 21.07023411, 22.0735786 , 23.07692308, 24.08026756, 25.08361204, 26.08695652, 27.090301 , 28.09364548, 29.09698997, 30.10033445, 31.10367893, 32.10702341, 33.11036789, 34.11371237, 35.11705686, 36.12040134, 37.12374582, 38.1270903 , 39.13043478, 40.13377926, 41.13712375, 42.14046823, 43.14381271, 44.14715719, 45.15050167, 46.15384615, 47.15719064, 48.16053512, 49.1638796 , 50.16722408, 51.17056856, 52.17391304, 53.17725753, 54.18060201, 55.18394649, 56.18729097, 57.19063545, 58.19397993, 59.19732441, 60.2006689 , 61.20401338, 62.20735786, 63.21070234, 64.21404682, 65.2173913 , 66.22073579, 67.22408027, 68.22742475, 69.23076923, 70.23411371, 71.23745819, 72.24080268, 73.24414716, 74.24749164, 75.25083612, 76.2541806 , 77.25752508, 78.26086957, 79.26421405, 80.26755853, 81.27090301, 82.27424749, 83.27759197, 84.28093645, 85.28428094, 86.28762542, 87.2909699 , 88.29431438, 89.29765886, 90.30100334, 91.30434783, 92.30769231, 93.31103679, 94.31438127, 95.31772575, 96.32107023, 97.32441472, 98.3277592 , 99.33110368, 100.33444816, 101.33779264, 102.34113712, 103.34448161, 104.34782609, 105.35117057, 106.35451505, 107.35785953, 108.36120401, 109.36454849, 110.36789298, 111.37123746, 112.37458194, 113.37792642, 114.3812709 , 115.38461538, 116.38795987, 117.39130435, 118.39464883, 119.39799331, 120.40133779, 121.40468227, 122.40802676, 123.41137124, 124.41471572, 125.4180602 , 126.42140468, 127.42474916, 128.42809365, 129.43143813, 130.43478261, 131.43812709, 132.44147157, 133.44481605, 134.44816054, 135.45150502, 136.4548495 , 137.45819398, 138.46153846, 139.46488294, 140.46822742, 141.47157191, 142.47491639, 143.47826087, 144.48160535, 145.48494983, 146.48829431, 147.4916388 , 148.49498328, 149.49832776, 150.50167224, 151.50501672, 152.5083612 , 153.51170569, 154.51505017, 155.51839465, 156.52173913, 157.52508361, 158.52842809, 159.53177258, 160.53511706, 161.53846154, 162.54180602, 163.5451505 , 164.54849498, 165.55183946, 166.55518395, 167.55852843, 168.56187291, 169.56521739, 170.56856187, 171.57190635, 172.57525084, 173.57859532, 174.5819398 , 175.58528428, 176.58862876, 177.59197324, 178.59531773, 179.59866221, 180.60200669, 181.60535117, 182.60869565, 183.61204013, 184.61538462, 185.6187291 , 186.62207358, 187.62541806, 188.62876254, 189.63210702, 190.63545151, 191.63879599, 192.64214047, 193.64548495, 194.64882943, 195.65217391, 196.65551839, 197.65886288, 198.66220736, 199.66555184, 200.66889632, 201.6722408 , 202.67558528, 203.67892977, 204.68227425, 205.68561873, 206.68896321, 207.69230769, 208.69565217, 209.69899666, 210.70234114, 211.70568562, 212.7090301 , 213.71237458, 214.71571906, 215.71906355, 216.72240803, 217.72575251, 218.72909699, 219.73244147, 220.73578595, 221.73913043, 222.74247492, 223.7458194 , 224.74916388, 225.75250836, 226.75585284, 227.75919732, 228.76254181, 229.76588629, 230.76923077, 231.77257525, 232.77591973, 233.77926421, 234.7826087 , 235.78595318, 236.78929766, 237.79264214, 238.79598662, 239.7993311 , 240.80267559, 241.80602007, 242.80936455, 243.81270903, 244.81605351, 245.81939799, 246.82274247, 247.82608696, 248.82943144, 249.83277592, 250.8361204 , 251.83946488, 252.84280936, 253.84615385, 254.84949833, 255.85284281, 256.85618729, 257.85953177, 258.86287625, 259.86622074, 260.86956522, 261.8729097 , 262.87625418, 263.87959866, 264.88294314, 265.88628763, 266.88963211, 267.89297659, 268.89632107, 269.89966555, 270.90301003, 271.90635452, 272.909699 , 273.91304348, 274.91638796, 275.91973244, 276.92307692, 277.9264214 , 278.92976589, 279.93311037, 280.93645485, 281.93979933, 282.94314381, 283.94648829, 284.94983278, 285.95317726, 286.95652174, 287.95986622, 288.9632107 , 289.96655518, 290.96989967, 291.97324415, 292.97658863, 293.97993311, 294.98327759, 295.98662207, 296.98996656, 297.99331104, 298.99665552, 300. ]) - z(z)int64mm10, 20
Values:
array([10, 20])
- (c, t, z, y, x)float32counts0.0, 1.0, ..., 89998.0, 89999.0
Values:
array([[[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]], [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]]], [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]], [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]]], [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]], [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]]], [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]], [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]]]], [[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]], [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]]], [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]], [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]]], [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]], [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]]], [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]], [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]]]], [[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]], [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]]], [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]], [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]]], [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]], [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]]], [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]], [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]]]]], shape=(3, 4, 2, 300, 400), dtype=float32)
[2]:
config = {"grid": True, "aspect": True}
img = sample_img.mean('c').mean('z')
(img['t', 0].plot(title='T=0', **config) + img['t', 1].plot(title='T=1', **config)) / (
img['t', 2].plot(title='T=2', **config) + img['t', 3].plot(title='T=3', **config)
)
[2]:
[3]:
from scitiff.io import save_scitiff
save_scitiff(sample_img, 'sample_img.tiff')
Load TIFF Image with Meta Data#
[4]:
from scitiff.io import load_scitiff
loaded_scitiff: sc.DataGroup[sc.DataArray] = load_scitiff('sample_img.tiff')
loaded_scitiff
[4]:
- imagescippDataArray(t: 4, z: 2, c: 3, y: 300, x: 400)float32counts0.0, 1.0, ..., 89998.0, 89999.0
[5]:
loaded_scitiff['image']
[5]:
scipp.DataArray (10.99 MB)
- t: 4
- z: 2
- c: 3
- y: 300
- x: 400
- c(c)stringR, G, B
Values:
["R", "G", "B"] - t(t)int64s0, 1, 2, 3
Values:
array([0, 1, 2, 3]) - x(x)float64mm0.0, 1.003, ..., 398.997, 400.0
Values:
array([ 0. , 1.00250627, 2.00501253, 3.0075188 , 4.01002506, 5.01253133, 6.01503759, 7.01754386, 8.02005013, 9.02255639, 10.02506266, 11.02756892, 12.03007519, 13.03258145, 14.03508772, 15.03759398, 16.04010025, 17.04260652, 18.04511278, 19.04761905, 20.05012531, 21.05263158, 22.05513784, 23.05764411, 24.06015038, 25.06265664, 26.06516291, 27.06766917, 28.07017544, 29.0726817 , 30.07518797, 31.07769424, 32.0802005 , 33.08270677, 34.08521303, 35.0877193 , 36.09022556, 37.09273183, 38.0952381 , 39.09774436, 40.10025063, 41.10275689, 42.10526316, 43.10776942, 44.11027569, 45.11278195, 46.11528822, 47.11779449, 48.12030075, 49.12280702, 50.12531328, 51.12781955, 52.13032581, 53.13283208, 54.13533835, 55.13784461, 56.14035088, 57.14285714, 58.14536341, 59.14786967, 60.15037594, 61.15288221, 62.15538847, 63.15789474, 64.160401 , 65.16290727, 66.16541353, 67.1679198 , 68.17042607, 69.17293233, 70.1754386 , 71.17794486, 72.18045113, 73.18295739, 74.18546366, 75.18796992, 76.19047619, 77.19298246, 78.19548872, 79.19799499, 80.20050125, 81.20300752, 82.20551378, 83.20802005, 84.21052632, 85.21303258, 86.21553885, 87.21804511, 88.22055138, 89.22305764, 90.22556391, 91.22807018, 92.23057644, 93.23308271, 94.23558897, 95.23809524, 96.2406015 , 97.24310777, 98.24561404, 99.2481203 , 100.25062657, 101.25313283, 102.2556391 , 103.25814536, 104.26065163, 105.26315789, 106.26566416, 107.26817043, 108.27067669, 109.27318296, 110.27568922, 111.27819549, 112.28070175, 113.28320802, 114.28571429, 115.28822055, 116.29072682, 117.29323308, 118.29573935, 119.29824561, 120.30075188, 121.30325815, 122.30576441, 123.30827068, 124.31077694, 125.31328321, 126.31578947, 127.31829574, 128.32080201, 129.32330827, 130.32581454, 131.3283208 , 132.33082707, 133.33333333, 134.3358396 , 135.33834586, 136.34085213, 137.3433584 , 138.34586466, 139.34837093, 140.35087719, 141.35338346, 142.35588972, 143.35839599, 144.36090226, 145.36340852, 146.36591479, 147.36842105, 148.37092732, 149.37343358, 150.37593985, 151.37844612, 152.38095238, 153.38345865, 154.38596491, 155.38847118, 156.39097744, 157.39348371, 158.39598997, 159.39849624, 160.40100251, 161.40350877, 162.40601504, 163.4085213 , 164.41102757, 165.41353383, 166.4160401 , 167.41854637, 168.42105263, 169.4235589 , 170.42606516, 171.42857143, 172.43107769, 173.43358396, 174.43609023, 175.43859649, 176.44110276, 177.44360902, 178.44611529, 179.44862155, 180.45112782, 181.45363409, 182.45614035, 183.45864662, 184.46115288, 185.46365915, 186.46616541, 187.46867168, 188.47117794, 189.47368421, 190.47619048, 191.47869674, 192.48120301, 193.48370927, 194.48621554, 195.4887218 , 196.49122807, 197.49373434, 198.4962406 , 199.49874687, 200.50125313, 201.5037594 , 202.50626566, 203.50877193, 204.5112782 , 205.51378446, 206.51629073, 207.51879699, 208.52130326, 209.52380952, 210.52631579, 211.52882206, 212.53132832, 213.53383459, 214.53634085, 215.53884712, 216.54135338, 217.54385965, 218.54636591, 219.54887218, 220.55137845, 221.55388471, 222.55639098, 223.55889724, 224.56140351, 225.56390977, 226.56641604, 227.56892231, 228.57142857, 229.57393484, 230.5764411 , 231.57894737, 232.58145363, 233.5839599 , 234.58646617, 235.58897243, 236.5914787 , 237.59398496, 238.59649123, 239.59899749, 240.60150376, 241.60401003, 242.60651629, 243.60902256, 244.61152882, 245.61403509, 246.61654135, 247.61904762, 248.62155388, 249.62406015, 250.62656642, 251.62907268, 252.63157895, 253.63408521, 254.63659148, 255.63909774, 256.64160401, 257.64411028, 258.64661654, 259.64912281, 260.65162907, 261.65413534, 262.6566416 , 263.65914787, 264.66165414, 265.6641604 , 266.66666667, 267.66917293, 268.6716792 , 269.67418546, 270.67669173, 271.67919799, 272.68170426, 273.68421053, 274.68671679, 275.68922306, 276.69172932, 277.69423559, 278.69674185, 279.69924812, 280.70175439, 281.70426065, 282.70676692, 283.70927318, 284.71177945, 285.71428571, 286.71679198, 287.71929825, 288.72180451, 289.72431078, 290.72681704, 291.72932331, 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Values:
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Values:
array([10, 20])
- (t, z, c, y, x)float32counts0.0, 1.0, ..., 89998.0, 89999.0
Values:
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6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]], [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]]], [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]], [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]], [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]]]], [[[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]], [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]], [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]]], [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]], [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]], [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]]]]], shape=(4, 2, 3, 300, 400), dtype=float32)
[6]:
config = {"grid": True, "aspect": True}
loaded_img = loaded_scitiff['image'].mean('c').mean('z')
(
loaded_img['t', 0].plot(title='T=0', **config)
+ loaded_img['t', 1].plot(title='T=1', **config)
) / (
loaded_img['t', 2].plot(title='T=2', **config)
+ loaded_img['t', 3].plot(title='T=3', **config)
)
[6]:
Load Non-Scitiff Images#
Sometimes you might want to load tiff images that are not compatible with scitiff. i.e. no metadata, incompatible dtype, or broken metadata with wrong fields or values.
load_scitiff will try to load metadata and handle incompatible profiles, but if it is not possible it will load the tiff image as it is and wrap it into scipp data structure.
Note
load_scitiff will throw warning if it fails to load the file as expected way so please pay attention to the warning messages.
[7]:
import tifffile as tf
tf.imwrite('no-meta.tiff', data=sample_img.values)
no_meta_loaded_image = load_scitiff('no-meta.tiff')['image']
display(no_meta_loaded_image)
no_meta_loaded_image_reduced = no_meta_loaded_image.sum('dim_0').sum('dim_2')
(
no_meta_loaded_image_reduced['dim_1', 0].plot(title='dim_1=0', **config)
+ no_meta_loaded_image_reduced['dim_1', 1].plot(title='dim_1=1', **config)
) / (
no_meta_loaded_image_reduced['dim_1', 2].plot(title='dim_1=2', **config)
+ no_meta_loaded_image_reduced['dim_1', 3].plot(title='dim_1=3', **config)
)
/tmp/ipykernel_3174/3829974585.py:4: ImageJMetadataNotFoundWarning: ImageJ metadata not found in the tiff file.
Loading the image with arbitrary dimensions...
no_meta_loaded_image = load_scitiff('no-meta.tiff')['image']
scipp.DataArray (10.99 MB)
- dim_0: 3
- dim_1: 4
- dim_2: 2
- dim_3: 300
- dim_4: 400
- (dim_0, dim_1, dim_2, dim_3, dim_4)float32𝟙0.0, 1.0, ..., 89998.0, 89999.0
Values:
array([[[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]], [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]]], [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]], [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]]], [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]], [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]]], [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]], [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]]]], [[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]], [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]]], [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]], [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]]], [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]], [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]]], [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]], [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]]]], [[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]], [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]]], [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]], [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]]], [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]], [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]]], [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]], [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]]]]], shape=(3, 4, 2, 300, 400), dtype=float32)
[7]:
Tip
You can rename the dimensions and use it just like other scitiff images. Do it only if you know which dim_{i} corresponds to which of (‘t’, ‘z’, ‘c’, ‘y’, ‘x’).
[8]:
renamed_image = no_meta_loaded_image.rename_dims(
{"dim_0": "c", "dim_1": "t", "dim_2": "z", "dim_3": "y", "dim_4": "x"}
)
display(renamed_image)
renamed_image_reduced = renamed_image.sum('z').sum('c')
(
renamed_image_reduced['t', 0].plot(title='T=0', **config)
+ renamed_image_reduced['t', 1].plot(title='T=1', **config)
) / (
renamed_image_reduced['t', 2].plot(title='T=2', **config)
+ renamed_image_reduced['t', 3].plot(title='T=3', **config)
)
scipp.DataArray (10.99 MB)
- c: 3
- t: 4
- z: 2
- y: 300
- x: 400
- (c, t, z, y, x)float32𝟙0.0, 1.0, ..., 89998.0, 89999.0
Values:
array([[[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]], [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]]], [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]], [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]]], [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]], [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]]], [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]], [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]]]], [[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]], [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]]], [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]], [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]]], [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]], [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]]], [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]], [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]]]], [[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]], [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]]], [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]], [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]]], [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]], [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]]], [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]], [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]]]]], shape=(3, 4, 2, 300, 400), dtype=float32)
[8]:
Mask and Standard Deviation#
In some cases, users need to save variances and masks into the file along with the counts.
For example, a simulated image is normalized with a background image with some 0 counts pixels. Then the variances are not simply same as the counts and 0 counts pixels of background image should be masked.
It is not practical to save such information in the plain text json.
Therefore scitiff.io has helpers to save/load mask and variances as channels.
Tip
If masks can be represented as 1 dimensional array, it is better to keep it as masks.
Here is the sample image we want to save and load. The image stack has 4 dimensions, (t, x, y, z) data, a mask with same dimension and variances. If we save it as it is, the mask is not accepted as it is not 1 dimensional array and the variances will be simply ignored.
[9]:
from scitiff.data import hyperstack_example_with_variances_and_mask
sample_img_with_stdev_and_mask = hyperstack_example_with_variances_and_mask()
display(sample_img_with_stdev_and_mask)
sample_img_with_stdev_and_mask['t', 0]['z', 0].plot(title="Masked Image, T=0, Z=0") + \
sample_img_with_stdev_and_mask['t', 1]['z', 0].plot(title="Masked Image, T=1, Z=0") + \
sample_img_with_stdev_and_mask['t', 2]['z', 0].plot(title="Masked Image, T=2, Z=0")
scipp.DataArray (8.25 MB)
- t: 4
- z: 2
- y: 300
- x: 400
- t(t)int64s0, 1, 2, 3
Values:
array([0, 1, 2, 3]) - x(x)float64mm0.0, 1.003, ..., 398.997, 400.0
Values:
array([ 0. , 1.00250627, 2.00501253, 3.0075188 , 4.01002506, 5.01253133, 6.01503759, 7.01754386, 8.02005013, 9.02255639, 10.02506266, 11.02756892, 12.03007519, 13.03258145, 14.03508772, 15.03759398, 16.04010025, 17.04260652, 18.04511278, 19.04761905, 20.05012531, 21.05263158, 22.05513784, 23.05764411, 24.06015038, 25.06265664, 26.06516291, 27.06766917, 28.07017544, 29.0726817 , 30.07518797, 31.07769424, 32.0802005 , 33.08270677, 34.08521303, 35.0877193 , 36.09022556, 37.09273183, 38.0952381 , 39.09774436, 40.10025063, 41.10275689, 42.10526316, 43.10776942, 44.11027569, 45.11278195, 46.11528822, 47.11779449, 48.12030075, 49.12280702, 50.12531328, 51.12781955, 52.13032581, 53.13283208, 54.13533835, 55.13784461, 56.14035088, 57.14285714, 58.14536341, 59.14786967, 60.15037594, 61.15288221, 62.15538847, 63.15789474, 64.160401 , 65.16290727, 66.16541353, 67.1679198 , 68.17042607, 69.17293233, 70.1754386 , 71.17794486, 72.18045113, 73.18295739, 74.18546366, 75.18796992, 76.19047619, 77.19298246, 78.19548872, 79.19799499, 80.20050125, 81.20300752, 82.20551378, 83.20802005, 84.21052632, 85.21303258, 86.21553885, 87.21804511, 88.22055138, 89.22305764, 90.22556391, 91.22807018, 92.23057644, 93.23308271, 94.23558897, 95.23809524, 96.2406015 , 97.24310777, 98.24561404, 99.2481203 , 100.25062657, 101.25313283, 102.2556391 , 103.25814536, 104.26065163, 105.26315789, 106.26566416, 107.26817043, 108.27067669, 109.27318296, 110.27568922, 111.27819549, 112.28070175, 113.28320802, 114.28571429, 115.28822055, 116.29072682, 117.29323308, 118.29573935, 119.29824561, 120.30075188, 121.30325815, 122.30576441, 123.30827068, 124.31077694, 125.31328321, 126.31578947, 127.31829574, 128.32080201, 129.32330827, 130.32581454, 131.3283208 , 132.33082707, 133.33333333, 134.3358396 , 135.33834586, 136.34085213, 137.3433584 , 138.34586466, 139.34837093, 140.35087719, 141.35338346, 142.35588972, 143.35839599, 144.36090226, 145.36340852, 146.36591479, 147.36842105, 148.37092732, 149.37343358, 150.37593985, 151.37844612, 152.38095238, 153.38345865, 154.38596491, 155.38847118, 156.39097744, 157.39348371, 158.39598997, 159.39849624, 160.40100251, 161.40350877, 162.40601504, 163.4085213 , 164.41102757, 165.41353383, 166.4160401 , 167.41854637, 168.42105263, 169.4235589 , 170.42606516, 171.42857143, 172.43107769, 173.43358396, 174.43609023, 175.43859649, 176.44110276, 177.44360902, 178.44611529, 179.44862155, 180.45112782, 181.45363409, 182.45614035, 183.45864662, 184.46115288, 185.46365915, 186.46616541, 187.46867168, 188.47117794, 189.47368421, 190.47619048, 191.47869674, 192.48120301, 193.48370927, 194.48621554, 195.4887218 , 196.49122807, 197.49373434, 198.4962406 , 199.49874687, 200.50125313, 201.5037594 , 202.50626566, 203.50877193, 204.5112782 , 205.51378446, 206.51629073, 207.51879699, 208.52130326, 209.52380952, 210.52631579, 211.52882206, 212.53132832, 213.53383459, 214.53634085, 215.53884712, 216.54135338, 217.54385965, 218.54636591, 219.54887218, 220.55137845, 221.55388471, 222.55639098, 223.55889724, 224.56140351, 225.56390977, 226.56641604, 227.56892231, 228.57142857, 229.57393484, 230.5764411 , 231.57894737, 232.58145363, 233.5839599 , 234.58646617, 235.58897243, 236.5914787 , 237.59398496, 238.59649123, 239.59899749, 240.60150376, 241.60401003, 242.60651629, 243.60902256, 244.61152882, 245.61403509, 246.61654135, 247.61904762, 248.62155388, 249.62406015, 250.62656642, 251.62907268, 252.63157895, 253.63408521, 254.63659148, 255.63909774, 256.64160401, 257.64411028, 258.64661654, 259.64912281, 260.65162907, 261.65413534, 262.6566416 , 263.65914787, 264.66165414, 265.6641604 , 266.66666667, 267.66917293, 268.6716792 , 269.67418546, 270.67669173, 271.67919799, 272.68170426, 273.68421053, 274.68671679, 275.68922306, 276.69172932, 277.69423559, 278.69674185, 279.69924812, 280.70175439, 281.70426065, 282.70676692, 283.70927318, 284.71177945, 285.71428571, 286.71679198, 287.71929825, 288.72180451, 289.72431078, 290.72681704, 291.72932331, 292.73182957, 293.73433584, 294.73684211, 295.73934837, 296.74185464, 297.7443609 , 298.74686717, 299.74937343, 300.7518797 , 301.75438596, 302.75689223, 303.7593985 , 304.76190476, 305.76441103, 306.76691729, 307.76942356, 308.77192982, 309.77443609, 310.77694236, 311.77944862, 312.78195489, 313.78446115, 314.78696742, 315.78947368, 316.79197995, 317.79448622, 318.79699248, 319.79949875, 320.80200501, 321.80451128, 322.80701754, 323.80952381, 324.81203008, 325.81453634, 326.81704261, 327.81954887, 328.82205514, 329.8245614 , 330.82706767, 331.82957393, 332.8320802 , 333.83458647, 334.83709273, 335.839599 , 336.84210526, 337.84461153, 338.84711779, 339.84962406, 340.85213033, 341.85463659, 342.85714286, 343.85964912, 344.86215539, 345.86466165, 346.86716792, 347.86967419, 348.87218045, 349.87468672, 350.87719298, 351.87969925, 352.88220551, 353.88471178, 354.88721805, 355.88972431, 356.89223058, 357.89473684, 358.89724311, 359.89974937, 360.90225564, 361.9047619 , 362.90726817, 363.90977444, 364.9122807 , 365.91478697, 366.91729323, 367.9197995 , 368.92230576, 369.92481203, 370.9273183 , 371.92982456, 372.93233083, 373.93483709, 374.93734336, 375.93984962, 376.94235589, 377.94486216, 378.94736842, 379.94987469, 380.95238095, 381.95488722, 382.95739348, 383.95989975, 384.96240602, 385.96491228, 386.96741855, 387.96992481, 388.97243108, 389.97493734, 390.97744361, 391.97994987, 392.98245614, 393.98496241, 394.98746867, 395.98997494, 396.9924812 , 397.99498747, 398.99749373, 400. ]) - y(y)float64mm0.0, 1.003, ..., 298.997, 300.0
Values:
array([ 0. , 1.00334448, 2.00668896, 3.01003344, 4.01337793, 5.01672241, 6.02006689, 7.02341137, 8.02675585, 9.03010033, 10.03344482, 11.0367893 , 12.04013378, 13.04347826, 14.04682274, 15.05016722, 16.05351171, 17.05685619, 18.06020067, 19.06354515, 20.06688963, 21.07023411, 22.0735786 , 23.07692308, 24.08026756, 25.08361204, 26.08695652, 27.090301 , 28.09364548, 29.09698997, 30.10033445, 31.10367893, 32.10702341, 33.11036789, 34.11371237, 35.11705686, 36.12040134, 37.12374582, 38.1270903 , 39.13043478, 40.13377926, 41.13712375, 42.14046823, 43.14381271, 44.14715719, 45.15050167, 46.15384615, 47.15719064, 48.16053512, 49.1638796 , 50.16722408, 51.17056856, 52.17391304, 53.17725753, 54.18060201, 55.18394649, 56.18729097, 57.19063545, 58.19397993, 59.19732441, 60.2006689 , 61.20401338, 62.20735786, 63.21070234, 64.21404682, 65.2173913 , 66.22073579, 67.22408027, 68.22742475, 69.23076923, 70.23411371, 71.23745819, 72.24080268, 73.24414716, 74.24749164, 75.25083612, 76.2541806 , 77.25752508, 78.26086957, 79.26421405, 80.26755853, 81.27090301, 82.27424749, 83.27759197, 84.28093645, 85.28428094, 86.28762542, 87.2909699 , 88.29431438, 89.29765886, 90.30100334, 91.30434783, 92.30769231, 93.31103679, 94.31438127, 95.31772575, 96.32107023, 97.32441472, 98.3277592 , 99.33110368, 100.33444816, 101.33779264, 102.34113712, 103.34448161, 104.34782609, 105.35117057, 106.35451505, 107.35785953, 108.36120401, 109.36454849, 110.36789298, 111.37123746, 112.37458194, 113.37792642, 114.3812709 , 115.38461538, 116.38795987, 117.39130435, 118.39464883, 119.39799331, 120.40133779, 121.40468227, 122.40802676, 123.41137124, 124.41471572, 125.4180602 , 126.42140468, 127.42474916, 128.42809365, 129.43143813, 130.43478261, 131.43812709, 132.44147157, 133.44481605, 134.44816054, 135.45150502, 136.4548495 , 137.45819398, 138.46153846, 139.46488294, 140.46822742, 141.47157191, 142.47491639, 143.47826087, 144.48160535, 145.48494983, 146.48829431, 147.4916388 , 148.49498328, 149.49832776, 150.50167224, 151.50501672, 152.5083612 , 153.51170569, 154.51505017, 155.51839465, 156.52173913, 157.52508361, 158.52842809, 159.53177258, 160.53511706, 161.53846154, 162.54180602, 163.5451505 , 164.54849498, 165.55183946, 166.55518395, 167.55852843, 168.56187291, 169.56521739, 170.56856187, 171.57190635, 172.57525084, 173.57859532, 174.5819398 , 175.58528428, 176.58862876, 177.59197324, 178.59531773, 179.59866221, 180.60200669, 181.60535117, 182.60869565, 183.61204013, 184.61538462, 185.6187291 , 186.62207358, 187.62541806, 188.62876254, 189.63210702, 190.63545151, 191.63879599, 192.64214047, 193.64548495, 194.64882943, 195.65217391, 196.65551839, 197.65886288, 198.66220736, 199.66555184, 200.66889632, 201.6722408 , 202.67558528, 203.67892977, 204.68227425, 205.68561873, 206.68896321, 207.69230769, 208.69565217, 209.69899666, 210.70234114, 211.70568562, 212.7090301 , 213.71237458, 214.71571906, 215.71906355, 216.72240803, 217.72575251, 218.72909699, 219.73244147, 220.73578595, 221.73913043, 222.74247492, 223.7458194 , 224.74916388, 225.75250836, 226.75585284, 227.75919732, 228.76254181, 229.76588629, 230.76923077, 231.77257525, 232.77591973, 233.77926421, 234.7826087 , 235.78595318, 236.78929766, 237.79264214, 238.79598662, 239.7993311 , 240.80267559, 241.80602007, 242.80936455, 243.81270903, 244.81605351, 245.81939799, 246.82274247, 247.82608696, 248.82943144, 249.83277592, 250.8361204 , 251.83946488, 252.84280936, 253.84615385, 254.84949833, 255.85284281, 256.85618729, 257.85953177, 258.86287625, 259.86622074, 260.86956522, 261.8729097 , 262.87625418, 263.87959866, 264.88294314, 265.88628763, 266.88963211, 267.89297659, 268.89632107, 269.89966555, 270.90301003, 271.90635452, 272.909699 , 273.91304348, 274.91638796, 275.91973244, 276.92307692, 277.9264214 , 278.92976589, 279.93311037, 280.93645485, 281.93979933, 282.94314381, 283.94648829, 284.94983278, 285.95317726, 286.95652174, 287.95986622, 288.9632107 , 289.96655518, 290.96989967, 291.97324415, 292.97658863, 293.97993311, 294.98327759, 295.98662207, 296.98996656, 297.99331104, 298.99665552, 300. ]) - z(z)int64mm10, 20
Values:
array([10, 20])
- (t, z, y, x)float32counts0.0, 1.0, ..., 89998.0, 89999.0σ = 0.0, 0.31622776, ..., 94.86727, 94.867805
Values:
array([[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]], [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]]], [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]], [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]]], [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]], [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]]], [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]], [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]]]], shape=(4, 2, 300, 400), dtype=float32)
Variances (σ²):
array([[[[0.00000000e+00, 1.00000001e-01, 2.00000003e-01, ..., 3.97000008e+01, 3.97999992e+01, 3.99000015e+01], [4.00000000e+01, 4.01000023e+01, 4.02000008e+01, ..., 7.97000046e+01, 7.98000031e+01, 7.99000015e+01], [8.00000000e+01, 8.00999985e+01, 8.02000046e+01, ..., 1.19700005e+02, 1.19800003e+02, 1.19900002e+02], ..., [1.18800000e+04, 1.18801006e+04, 1.18802002e+04, ..., 1.19197002e+04, 1.19197998e+04, 1.19199004e+04], [1.19200000e+04, 1.19201006e+04, 1.19202002e+04, ..., 1.19597002e+04, 1.19597998e+04, 1.19599004e+04], [1.19600000e+04, 1.19601006e+04, 1.19602002e+04, ..., 1.19997002e+04, 1.19997998e+04, 1.19999004e+04]], [[0.00000000e+00, 1.00000001e-01, 2.00000003e-01, ..., 3.97000008e+01, 3.97999992e+01, 3.99000015e+01], [4.00000000e+01, 4.01000023e+01, 4.02000008e+01, ..., 7.97000046e+01, 7.98000031e+01, 7.99000015e+01], [8.00000000e+01, 8.00999985e+01, 8.02000046e+01, ..., 1.19700005e+02, 1.19800003e+02, 1.19900002e+02], ..., [1.18800000e+04, 1.18801006e+04, 1.18802002e+04, ..., 1.19197002e+04, 1.19197998e+04, 1.19199004e+04], [1.19200000e+04, 1.19201006e+04, 1.19202002e+04, ..., 1.19597002e+04, 1.19597998e+04, 1.19599004e+04], [1.19600000e+04, 1.19601006e+04, 1.19602002e+04, ..., 1.19997002e+04, 1.19997998e+04, 1.19999004e+04]]], [[[3.00000000e+03, 3.00010010e+03, 3.00019995e+03, ..., 3.03969995e+03, 3.03980005e+03, 3.03990015e+03], [3.04000000e+03, 3.04010010e+03, 3.04019995e+03, ..., 3.07969995e+03, 3.07980005e+03, 3.07990015e+03], [3.08000000e+03, 3.08010010e+03, 3.08019995e+03, ..., 3.11969995e+03, 3.11980005e+03, 3.11990015e+03], ..., [2.88000000e+03, 2.88010010e+03, 2.88019995e+03, ..., 2.91969995e+03, 2.91980005e+03, 2.91990015e+03], [2.92000000e+03, 2.92010010e+03, 2.92019995e+03, ..., 2.95969995e+03, 2.95980005e+03, 2.95990015e+03], [2.96000000e+03, 2.96010010e+03, 2.96019995e+03, ..., 2.99969995e+03, 2.99980005e+03, 2.99990015e+03]], [[3.00000000e+03, 3.00010010e+03, 3.00019995e+03, ..., 3.03969995e+03, 3.03980005e+03, 3.03990015e+03], [3.04000000e+03, 3.04010010e+03, 3.04019995e+03, ..., 3.07969995e+03, 3.07980005e+03, 3.07990015e+03], [3.08000000e+03, 3.08010010e+03, 3.08019995e+03, ..., 3.11969995e+03, 3.11980005e+03, 3.11990015e+03], ..., [2.88000000e+03, 2.88010010e+03, 2.88019995e+03, ..., 2.91969995e+03, 2.91980005e+03, 2.91990015e+03], [2.92000000e+03, 2.92010010e+03, 2.92019995e+03, ..., 2.95969995e+03, 2.95980005e+03, 2.95990015e+03], [2.96000000e+03, 2.96010010e+03, 2.96019995e+03, ..., 2.99969995e+03, 2.99980005e+03, 2.99990015e+03]]], [[[6.00000000e+03, 6.00010010e+03, 6.00020020e+03, ..., 6.03970020e+03, 6.03980029e+03, 6.03989990e+03], [6.04000000e+03, 6.04010010e+03, 6.04020020e+03, ..., 6.07970020e+03, 6.07980029e+03, 6.07989990e+03], [6.08000000e+03, 6.08010010e+03, 6.08020020e+03, ..., 6.11970020e+03, 6.11980029e+03, 6.11989990e+03], ..., [5.88000000e+03, 5.88010010e+03, 5.88020020e+03, ..., 5.91970020e+03, 5.91980029e+03, 5.91989990e+03], [5.92000000e+03, 5.92010010e+03, 5.92020020e+03, ..., 5.95970020e+03, 5.95980029e+03, 5.95989990e+03], [5.96000000e+03, 5.96010010e+03, 5.96020020e+03, ..., 5.99970020e+03, 5.99980029e+03, 5.99989990e+03]], [[6.00000000e+03, 6.00010010e+03, 6.00020020e+03, ..., 6.03970020e+03, 6.03980029e+03, 6.03989990e+03], [6.04000000e+03, 6.04010010e+03, 6.04020020e+03, ..., 6.07970020e+03, 6.07980029e+03, 6.07989990e+03], [6.08000000e+03, 6.08010010e+03, 6.08020020e+03, ..., 6.11970020e+03, 6.11980029e+03, 6.11989990e+03], ..., [5.88000000e+03, 5.88010010e+03, 5.88020020e+03, ..., 5.91970020e+03, 5.91980029e+03, 5.91989990e+03], [5.92000000e+03, 5.92010010e+03, 5.92020020e+03, ..., 5.95970020e+03, 5.95980029e+03, 5.95989990e+03], [5.96000000e+03, 5.96010010e+03, 5.96020020e+03, ..., 5.99970020e+03, 5.99980029e+03, 5.99989990e+03]]], [[[9.00000000e+03, 9.00010059e+03, 9.00020020e+03, ..., 9.03970020e+03, 9.03979980e+03, 9.03990039e+03], [9.04000000e+03, 9.04010059e+03, 9.04020020e+03, ..., 9.07970020e+03, 9.07979980e+03, 9.07990039e+03], [9.08000000e+03, 9.08010059e+03, 9.08020020e+03, ..., 9.11970020e+03, 9.11979980e+03, 9.11990039e+03], ..., [8.88000000e+03, 8.88010059e+03, 8.88020020e+03, ..., 8.91970020e+03, 8.91979980e+03, 8.91990039e+03], [8.92000000e+03, 8.92010059e+03, 8.92020020e+03, ..., 8.95970020e+03, 8.95979980e+03, 8.95990039e+03], [8.96000000e+03, 8.96010059e+03, 8.96020020e+03, ..., 8.99970020e+03, 8.99979980e+03, 8.99990039e+03]], [[9.00000000e+03, 9.00010059e+03, 9.00020020e+03, ..., 9.03970020e+03, 9.03979980e+03, 9.03990039e+03], [9.04000000e+03, 9.04010059e+03, 9.04020020e+03, ..., 9.07970020e+03, 9.07979980e+03, 9.07990039e+03], [9.08000000e+03, 9.08010059e+03, 9.08020020e+03, ..., 9.11970020e+03, 9.11979980e+03, 9.11990039e+03], ..., [8.88000000e+03, 8.88010059e+03, 8.88020020e+03, ..., 8.91970020e+03, 8.91979980e+03, 8.91990039e+03], [8.92000000e+03, 8.92010059e+03, 8.92020020e+03, ..., 8.95970020e+03, 8.95979980e+03, 8.95990039e+03], [8.96000000e+03, 8.96010059e+03, 8.96020020e+03, ..., 8.99970020e+03, 8.99979980e+03, 8.99990039e+03]]]], shape=(4, 2, 300, 400), dtype=float32)
- mask(t, z, y, x)boolTrue, True, ..., False, False
Values:
array([[[[ True, True, False, ..., True, True, True], [False, False, False, ..., True, False, True], [False, False, True, ..., True, True, False], ..., [ True, False, True, ..., True, True, True], [ True, True, True, ..., False, False, True], [ True, False, False, ..., False, False, False]], [[False, False, False, ..., True, True, True], [ True, True, False, ..., False, False, False], [ True, True, False, ..., False, True, False], ..., [False, False, True, ..., False, False, False], [ True, True, False, ..., True, False, False], [ True, False, True, ..., False, True, False]]], [[[ True, True, True, ..., True, False, True], [ True, False, False, ..., True, True, True], [ True, False, True, ..., False, False, False], ..., [ True, False, True, ..., False, False, True], [ True, False, True, ..., False, True, True], [ True, True, False, ..., False, True, True]], [[False, False, True, ..., True, True, False], [False, True, False, ..., True, False, True], [False, True, False, ..., True, True, True], ..., [False, False, True, ..., False, False, True], [ True, False, True, ..., True, False, True], [False, False, True, ..., True, False, False]]], [[[ True, False, True, ..., True, False, False], [ True, False, False, ..., True, True, False], [False, True, True, ..., False, True, False], ..., [ True, True, False, ..., False, False, False], [False, False, True, ..., True, False, False], [ True, False, False, ..., True, False, True]], [[ True, False, True, ..., False, False, False], [False, False, False, ..., False, False, False], [False, False, False, ..., True, True, False], ..., [ True, True, True, ..., True, True, True], [False, True, True, ..., False, False, True], [False, True, False, ..., False, True, False]]], [[[False, True, True, ..., False, True, True], [ True, True, False, ..., False, True, True], [ True, False, False, ..., True, False, False], ..., [ True, False, False, ..., True, False, True], [False, True, True, ..., False, True, True], [ True, True, True, ..., True, False, False]], [[ True, False, True, ..., False, True, False], [False, False, False, ..., True, True, True], [ True, True, True, ..., False, False, False], ..., [ True, True, False, ..., True, False, False], [ True, False, True, ..., False, True, True], [False, True, True, ..., True, False, False]]]], shape=(4, 2, 300, 400))
[9]:
Save Mask and Standard Deviation#
In order to save the mask and the variances,
you can simply set concat_stdevs_and_mask argument to True of save_scitiff.
Then it will concatenate stdevs and mask into channel dimension before it saves the image.
[10]:
from scitiff.io import save_scitiff
save_scitiff(
sample_img_with_stdev_and_mask,
'sample_img_with_stdev_and_mask.tiff',
concat_stdevs_and_mask=True,
mask_name='mask',
)
/home/runner/work/scitiff/scitiff/.tox/docs/lib/python3.10/site-packages/scitiff/io.py:396: FutureWarning: Multi-channel images interpreted as `intensities`, `stdevs` and `mask` is not yet officially supported by ``Scitiff`` schema.
**Please do not use this function for production.**
**It may change in the future.**
_warn_about_multi_channel_images()
Or you can manually translate the image to have stdevs and mask concatenated into channel dimension.
Note that the c (channel) coordinate has string values that indicates which channel is intensities, stdevs or mask.
And you can save the object as it is.
[11]:
from scitiff.io import save_scitiff
from scitiff.io import to_scitiff_image
da = to_scitiff_image(
sample_img_with_stdev_and_mask, concat_stdevs_and_mask=True, mask_name='mask'
)
display(da)
save_scitiff(da, 'sample_img_with_stdev_and_mask.tiff')
scipp.DataArray (10.99 MB)
- t: 4
- z: 2
- c: 3
- y: 300
- x: 400
- c(c)stringintensities, stdevs, mask
Values:
["intensities", "stdevs", "mask"] - t(t)int64s0, 1, 2, 3
Values:
array([0, 1, 2, 3]) - x(x)float64mm0.0, 1.003, ..., 398.997, 400.0
Values:
array([ 0. , 1.00250627, 2.00501253, 3.0075188 , 4.01002506, 5.01253133, 6.01503759, 7.01754386, 8.02005013, 9.02255639, 10.02506266, 11.02756892, 12.03007519, 13.03258145, 14.03508772, 15.03759398, 16.04010025, 17.04260652, 18.04511278, 19.04761905, 20.05012531, 21.05263158, 22.05513784, 23.05764411, 24.06015038, 25.06265664, 26.06516291, 27.06766917, 28.07017544, 29.0726817 , 30.07518797, 31.07769424, 32.0802005 , 33.08270677, 34.08521303, 35.0877193 , 36.09022556, 37.09273183, 38.0952381 , 39.09774436, 40.10025063, 41.10275689, 42.10526316, 43.10776942, 44.11027569, 45.11278195, 46.11528822, 47.11779449, 48.12030075, 49.12280702, 50.12531328, 51.12781955, 52.13032581, 53.13283208, 54.13533835, 55.13784461, 56.14035088, 57.14285714, 58.14536341, 59.14786967, 60.15037594, 61.15288221, 62.15538847, 63.15789474, 64.160401 , 65.16290727, 66.16541353, 67.1679198 , 68.17042607, 69.17293233, 70.1754386 , 71.17794486, 72.18045113, 73.18295739, 74.18546366, 75.18796992, 76.19047619, 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363.90977444, 364.9122807 , 365.91478697, 366.91729323, 367.9197995 , 368.92230576, 369.92481203, 370.9273183 , 371.92982456, 372.93233083, 373.93483709, 374.93734336, 375.93984962, 376.94235589, 377.94486216, 378.94736842, 379.94987469, 380.95238095, 381.95488722, 382.95739348, 383.95989975, 384.96240602, 385.96491228, 386.96741855, 387.96992481, 388.97243108, 389.97493734, 390.97744361, 391.97994987, 392.98245614, 393.98496241, 394.98746867, 395.98997494, 396.9924812 , 397.99498747, 398.99749373, 400. ]) - y(y)float64mm0.0, 1.003, ..., 298.997, 300.0
Values:
array([ 0. , 1.00334448, 2.00668896, 3.01003344, 4.01337793, 5.01672241, 6.02006689, 7.02341137, 8.02675585, 9.03010033, 10.03344482, 11.0367893 , 12.04013378, 13.04347826, 14.04682274, 15.05016722, 16.05351171, 17.05685619, 18.06020067, 19.06354515, 20.06688963, 21.07023411, 22.0735786 , 23.07692308, 24.08026756, 25.08361204, 26.08695652, 27.090301 , 28.09364548, 29.09698997, 30.10033445, 31.10367893, 32.10702341, 33.11036789, 34.11371237, 35.11705686, 36.12040134, 37.12374582, 38.1270903 , 39.13043478, 40.13377926, 41.13712375, 42.14046823, 43.14381271, 44.14715719, 45.15050167, 46.15384615, 47.15719064, 48.16053512, 49.1638796 , 50.16722408, 51.17056856, 52.17391304, 53.17725753, 54.18060201, 55.18394649, 56.18729097, 57.19063545, 58.19397993, 59.19732441, 60.2006689 , 61.20401338, 62.20735786, 63.21070234, 64.21404682, 65.2173913 , 66.22073579, 67.22408027, 68.22742475, 69.23076923, 70.23411371, 71.23745819, 72.24080268, 73.24414716, 74.24749164, 75.25083612, 76.2541806 , 77.25752508, 78.26086957, 79.26421405, 80.26755853, 81.27090301, 82.27424749, 83.27759197, 84.28093645, 85.28428094, 86.28762542, 87.2909699 , 88.29431438, 89.29765886, 90.30100334, 91.30434783, 92.30769231, 93.31103679, 94.31438127, 95.31772575, 96.32107023, 97.32441472, 98.3277592 , 99.33110368, 100.33444816, 101.33779264, 102.34113712, 103.34448161, 104.34782609, 105.35117057, 106.35451505, 107.35785953, 108.36120401, 109.36454849, 110.36789298, 111.37123746, 112.37458194, 113.37792642, 114.3812709 , 115.38461538, 116.38795987, 117.39130435, 118.39464883, 119.39799331, 120.40133779, 121.40468227, 122.40802676, 123.41137124, 124.41471572, 125.4180602 , 126.42140468, 127.42474916, 128.42809365, 129.43143813, 130.43478261, 131.43812709, 132.44147157, 133.44481605, 134.44816054, 135.45150502, 136.4548495 , 137.45819398, 138.46153846, 139.46488294, 140.46822742, 141.47157191, 142.47491639, 143.47826087, 144.48160535, 145.48494983, 146.48829431, 147.4916388 , 148.49498328, 149.49832776, 150.50167224, 151.50501672, 152.5083612 , 153.51170569, 154.51505017, 155.51839465, 156.52173913, 157.52508361, 158.52842809, 159.53177258, 160.53511706, 161.53846154, 162.54180602, 163.5451505 , 164.54849498, 165.55183946, 166.55518395, 167.55852843, 168.56187291, 169.56521739, 170.56856187, 171.57190635, 172.57525084, 173.57859532, 174.5819398 , 175.58528428, 176.58862876, 177.59197324, 178.59531773, 179.59866221, 180.60200669, 181.60535117, 182.60869565, 183.61204013, 184.61538462, 185.6187291 , 186.62207358, 187.62541806, 188.62876254, 189.63210702, 190.63545151, 191.63879599, 192.64214047, 193.64548495, 194.64882943, 195.65217391, 196.65551839, 197.65886288, 198.66220736, 199.66555184, 200.66889632, 201.6722408 , 202.67558528, 203.67892977, 204.68227425, 205.68561873, 206.68896321, 207.69230769, 208.69565217, 209.69899666, 210.70234114, 211.70568562, 212.7090301 , 213.71237458, 214.71571906, 215.71906355, 216.72240803, 217.72575251, 218.72909699, 219.73244147, 220.73578595, 221.73913043, 222.74247492, 223.7458194 , 224.74916388, 225.75250836, 226.75585284, 227.75919732, 228.76254181, 229.76588629, 230.76923077, 231.77257525, 232.77591973, 233.77926421, 234.7826087 , 235.78595318, 236.78929766, 237.79264214, 238.79598662, 239.7993311 , 240.80267559, 241.80602007, 242.80936455, 243.81270903, 244.81605351, 245.81939799, 246.82274247, 247.82608696, 248.82943144, 249.83277592, 250.8361204 , 251.83946488, 252.84280936, 253.84615385, 254.84949833, 255.85284281, 256.85618729, 257.85953177, 258.86287625, 259.86622074, 260.86956522, 261.8729097 , 262.87625418, 263.87959866, 264.88294314, 265.88628763, 266.88963211, 267.89297659, 268.89632107, 269.89966555, 270.90301003, 271.90635452, 272.909699 , 273.91304348, 274.91638796, 275.91973244, 276.92307692, 277.9264214 , 278.92976589, 279.93311037, 280.93645485, 281.93979933, 282.94314381, 283.94648829, 284.94983278, 285.95317726, 286.95652174, 287.95986622, 288.9632107 , 289.96655518, 290.96989967, 291.97324415, 292.97658863, 293.97993311, 294.98327759, 295.98662207, 296.98996656, 297.99331104, 298.99665552, 300. ]) - z(z)int64mm10, 20
Values:
array([10, 20])
- (t, z, c, y, x)float32counts0.0, 1.0, ..., 0.0, 0.0
Values:
array([[[[[0.00000000e+00, 1.00000000e+00, 2.00000000e+00, ..., 3.97000000e+02, 3.98000000e+02, 3.99000000e+02], [4.00000000e+02, 4.01000000e+02, 4.02000000e+02, ..., 7.97000000e+02, 7.98000000e+02, 7.99000000e+02], [8.00000000e+02, 8.01000000e+02, 8.02000000e+02, ..., 1.19700000e+03, 1.19800000e+03, 1.19900000e+03], ..., [1.18800000e+05, 1.18801000e+05, 1.18802000e+05, ..., 1.19197000e+05, 1.19198000e+05, 1.19199000e+05], [1.19200000e+05, 1.19201000e+05, 1.19202000e+05, ..., 1.19597000e+05, 1.19598000e+05, 1.19599000e+05], [1.19600000e+05, 1.19601000e+05, 1.19602000e+05, ..., 1.19997000e+05, 1.19998000e+05, 1.19999000e+05]], [[0.00000000e+00, 3.16227764e-01, 4.47213590e-01, ..., 6.30079365e+00, 6.30872393e+00, 6.31664467e+00], [6.32455540e+00, 6.33245611e+00, 6.34034729e+00, ..., 8.92748547e+00, 8.93308449e+00, 8.93867970e+00], [8.94427204e+00, 8.94986057e+00, 8.95544529e+00, ..., 1.09407501e+01, 1.09453192e+01, 1.09498863e+01], ..., [1.08995415e+02, 1.08995872e+02, 1.08996330e+02, ..., 1.09177376e+02, 1.09177834e+02, 1.09178299e+02], [1.09178749e+02, 1.09179214e+02, 1.09179672e+02, ..., 1.09360413e+02, 1.09360870e+02, 1.09361328e+02], [1.09361786e+02, 1.09362244e+02, 1.09362701e+02, ..., 1.09543144e+02, 1.09543594e+02, 1.09544060e+02]], [[1.00000000e+00, 1.00000000e+00, 0.00000000e+00, ..., 1.00000000e+00, 1.00000000e+00, 1.00000000e+00], [0.00000000e+00, 0.00000000e+00, 0.00000000e+00, ..., 1.00000000e+00, 0.00000000e+00, 1.00000000e+00], [0.00000000e+00, 0.00000000e+00, 1.00000000e+00, ..., 1.00000000e+00, 1.00000000e+00, 0.00000000e+00], ..., [1.00000000e+00, 0.00000000e+00, 1.00000000e+00, ..., 1.00000000e+00, 1.00000000e+00, 1.00000000e+00], [1.00000000e+00, 1.00000000e+00, 1.00000000e+00, ..., 0.00000000e+00, 0.00000000e+00, 1.00000000e+00], [1.00000000e+00, 0.00000000e+00, 0.00000000e+00, ..., 0.00000000e+00, 0.00000000e+00, 0.00000000e+00]]], [[[0.00000000e+00, 1.00000000e+00, 2.00000000e+00, ..., 3.97000000e+02, 3.98000000e+02, 3.99000000e+02], [4.00000000e+02, 4.01000000e+02, 4.02000000e+02, ..., 7.97000000e+02, 7.98000000e+02, 7.99000000e+02], [8.00000000e+02, 8.01000000e+02, 8.02000000e+02, ..., 1.19700000e+03, 1.19800000e+03, 1.19900000e+03], ..., [1.18800000e+05, 1.18801000e+05, 1.18802000e+05, ..., 1.19197000e+05, 1.19198000e+05, 1.19199000e+05], [1.19200000e+05, 1.19201000e+05, 1.19202000e+05, ..., 1.19597000e+05, 1.19598000e+05, 1.19599000e+05], [1.19600000e+05, 1.19601000e+05, 1.19602000e+05, ..., 1.19997000e+05, 1.19998000e+05, 1.19999000e+05]], [[0.00000000e+00, 3.16227764e-01, 4.47213590e-01, ..., 6.30079365e+00, 6.30872393e+00, 6.31664467e+00], [6.32455540e+00, 6.33245611e+00, 6.34034729e+00, ..., 8.92748547e+00, 8.93308449e+00, 8.93867970e+00], [8.94427204e+00, 8.94986057e+00, 8.95544529e+00, ..., 1.09407501e+01, 1.09453192e+01, 1.09498863e+01], ..., [1.08995415e+02, 1.08995872e+02, 1.08996330e+02, ..., 1.09177376e+02, 1.09177834e+02, 1.09178299e+02], [1.09178749e+02, 1.09179214e+02, 1.09179672e+02, ..., 1.09360413e+02, 1.09360870e+02, 1.09361328e+02], [1.09361786e+02, 1.09362244e+02, 1.09362701e+02, ..., 1.09543144e+02, 1.09543594e+02, 1.09544060e+02]], [[0.00000000e+00, 0.00000000e+00, 0.00000000e+00, ..., 1.00000000e+00, 1.00000000e+00, 1.00000000e+00], [1.00000000e+00, 1.00000000e+00, 0.00000000e+00, ..., 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [1.00000000e+00, 1.00000000e+00, 0.00000000e+00, ..., 0.00000000e+00, 1.00000000e+00, 0.00000000e+00], ..., [0.00000000e+00, 0.00000000e+00, 1.00000000e+00, ..., 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [1.00000000e+00, 1.00000000e+00, 0.00000000e+00, ..., 1.00000000e+00, 0.00000000e+00, 0.00000000e+00], [1.00000000e+00, 0.00000000e+00, 1.00000000e+00, ..., 0.00000000e+00, 1.00000000e+00, 0.00000000e+00]]]], [[[[3.00000000e+04, 3.00010000e+04, 3.00020000e+04, ..., 3.03970000e+04, 3.03980000e+04, 3.03990000e+04], [3.04000000e+04, 3.04010000e+04, 3.04020000e+04, ..., 3.07970000e+04, 3.07980000e+04, 3.07990000e+04], [3.08000000e+04, 3.08010000e+04, 3.08020000e+04, ..., 3.11970000e+04, 3.11980000e+04, 3.11990000e+04], ..., [2.88000000e+04, 2.88010000e+04, 2.88020000e+04, ..., 2.91970000e+04, 2.91980000e+04, 2.91990000e+04], [2.92000000e+04, 2.92010000e+04, 2.92020000e+04, ..., 2.95970000e+04, 2.95980000e+04, 2.95990000e+04], [2.96000000e+04, 2.96010000e+04, 2.96020000e+04, ..., 2.99970000e+04, 2.99980000e+04, 2.99990000e+04]], [[5.47722549e+01, 5.47731705e+01, 5.47740822e+01, ..., 5.51334724e+01, 5.51343803e+01, 5.51352882e+01], [5.51361961e+01, 5.51371040e+01, 5.51380081e+01, ..., 5.54950447e+01, 5.54959450e+01, 5.54968491e+01], [5.54977493e+01, 5.54986496e+01, 5.54995499e+01, ..., 5.58542747e+01, 5.58551712e+01, 5.58560677e+01], ..., [5.36656303e+01, 5.36665649e+01, 5.36674957e+01, ..., 5.40342484e+01, 5.40351753e+01, 5.40361023e+01], [5.40370255e+01, 5.40379524e+01, 5.40388756e+01, ..., 5.44031258e+01, 5.44040451e+01, 5.44049644e+01], [5.44058838e+01, 5.44068031e+01, 5.44077187e+01, ..., 5.47695160e+01, 5.47704315e+01, 5.47713432e+01]], [[1.00000000e+00, 1.00000000e+00, 1.00000000e+00, ..., 1.00000000e+00, 0.00000000e+00, 1.00000000e+00], [1.00000000e+00, 0.00000000e+00, 0.00000000e+00, ..., 1.00000000e+00, 1.00000000e+00, 1.00000000e+00], [1.00000000e+00, 0.00000000e+00, 1.00000000e+00, ..., 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], ..., [1.00000000e+00, 0.00000000e+00, 1.00000000e+00, ..., 0.00000000e+00, 0.00000000e+00, 1.00000000e+00], [1.00000000e+00, 0.00000000e+00, 1.00000000e+00, ..., 0.00000000e+00, 1.00000000e+00, 1.00000000e+00], [1.00000000e+00, 1.00000000e+00, 0.00000000e+00, ..., 0.00000000e+00, 1.00000000e+00, 1.00000000e+00]]], [[[3.00000000e+04, 3.00010000e+04, 3.00020000e+04, ..., 3.03970000e+04, 3.03980000e+04, 3.03990000e+04], [3.04000000e+04, 3.04010000e+04, 3.04020000e+04, ..., 3.07970000e+04, 3.07980000e+04, 3.07990000e+04], [3.08000000e+04, 3.08010000e+04, 3.08020000e+04, ..., 3.11970000e+04, 3.11980000e+04, 3.11990000e+04], ..., [2.88000000e+04, 2.88010000e+04, 2.88020000e+04, ..., 2.91970000e+04, 2.91980000e+04, 2.91990000e+04], [2.92000000e+04, 2.92010000e+04, 2.92020000e+04, ..., 2.95970000e+04, 2.95980000e+04, 2.95990000e+04], [2.96000000e+04, 2.96010000e+04, 2.96020000e+04, ..., 2.99970000e+04, 2.99980000e+04, 2.99990000e+04]], [[5.47722549e+01, 5.47731705e+01, 5.47740822e+01, ..., 5.51334724e+01, 5.51343803e+01, 5.51352882e+01], [5.51361961e+01, 5.51371040e+01, 5.51380081e+01, ..., 5.54950447e+01, 5.54959450e+01, 5.54968491e+01], [5.54977493e+01, 5.54986496e+01, 5.54995499e+01, ..., 5.58542747e+01, 5.58551712e+01, 5.58560677e+01], ..., [5.36656303e+01, 5.36665649e+01, 5.36674957e+01, ..., 5.40342484e+01, 5.40351753e+01, 5.40361023e+01], [5.40370255e+01, 5.40379524e+01, 5.40388756e+01, ..., 5.44031258e+01, 5.44040451e+01, 5.44049644e+01], [5.44058838e+01, 5.44068031e+01, 5.44077187e+01, ..., 5.47695160e+01, 5.47704315e+01, 5.47713432e+01]], [[0.00000000e+00, 0.00000000e+00, 1.00000000e+00, ..., 1.00000000e+00, 1.00000000e+00, 0.00000000e+00], [0.00000000e+00, 1.00000000e+00, 0.00000000e+00, ..., 1.00000000e+00, 0.00000000e+00, 1.00000000e+00], [0.00000000e+00, 1.00000000e+00, 0.00000000e+00, ..., 1.00000000e+00, 1.00000000e+00, 1.00000000e+00], ..., [0.00000000e+00, 0.00000000e+00, 1.00000000e+00, ..., 0.00000000e+00, 0.00000000e+00, 1.00000000e+00], [1.00000000e+00, 0.00000000e+00, 1.00000000e+00, ..., 1.00000000e+00, 0.00000000e+00, 1.00000000e+00], [0.00000000e+00, 0.00000000e+00, 1.00000000e+00, ..., 1.00000000e+00, 0.00000000e+00, 0.00000000e+00]]]], [[[[6.00000000e+04, 6.00010000e+04, 6.00020000e+04, ..., 6.03970000e+04, 6.03980000e+04, 6.03990000e+04], [6.04000000e+04, 6.04010000e+04, 6.04020000e+04, ..., 6.07970000e+04, 6.07980000e+04, 6.07990000e+04], [6.08000000e+04, 6.08010000e+04, 6.08020000e+04, ..., 6.11970000e+04, 6.11980000e+04, 6.11990000e+04], ..., [5.88000000e+04, 5.88010000e+04, 5.88020000e+04, ..., 5.91970000e+04, 5.91980000e+04, 5.91990000e+04], [5.92000000e+04, 5.92010000e+04, 5.92020000e+04, ..., 5.95970000e+04, 5.95980000e+04, 5.95990000e+04], [5.96000000e+04, 5.96010000e+04, 5.96020000e+04, ..., 5.99970000e+04, 5.99980000e+04, 5.99990000e+04]], [[7.74596634e+01, 7.74603119e+01, 7.74609604e+01, ..., 7.77155075e+01, 7.77161484e+01, 7.77167892e+01], [7.77174377e+01, 7.77180786e+01, 7.77187271e+01, ..., 7.79724350e+01, 7.79730759e+01, 7.79737091e+01], [7.79743576e+01, 7.79749985e+01, 7.79756393e+01, ..., 7.82285156e+01, 7.82291489e+01, 7.82297897e+01], ..., [7.66811600e+01, 7.66818085e+01, 7.66824646e+01, ..., 7.69395905e+01, 7.69402390e+01, 7.69408875e+01], [7.69415359e+01, 7.69421844e+01, 7.69428406e+01, ..., 7.71990967e+01, 7.71997452e+01, 7.72003860e+01], [7.72010345e+01, 7.72016830e+01, 7.72023315e+01, ..., 7.74577332e+01, 7.74583740e+01, 7.74590225e+01]], [[1.00000000e+00, 0.00000000e+00, 1.00000000e+00, ..., 1.00000000e+00, 0.00000000e+00, 0.00000000e+00], [1.00000000e+00, 0.00000000e+00, 0.00000000e+00, ..., 1.00000000e+00, 1.00000000e+00, 0.00000000e+00], [0.00000000e+00, 1.00000000e+00, 1.00000000e+00, ..., 0.00000000e+00, 1.00000000e+00, 0.00000000e+00], ..., [1.00000000e+00, 1.00000000e+00, 0.00000000e+00, ..., 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [0.00000000e+00, 0.00000000e+00, 1.00000000e+00, ..., 1.00000000e+00, 0.00000000e+00, 0.00000000e+00], [1.00000000e+00, 0.00000000e+00, 0.00000000e+00, ..., 1.00000000e+00, 0.00000000e+00, 1.00000000e+00]]], [[[6.00000000e+04, 6.00010000e+04, 6.00020000e+04, ..., 6.03970000e+04, 6.03980000e+04, 6.03990000e+04], [6.04000000e+04, 6.04010000e+04, 6.04020000e+04, ..., 6.07970000e+04, 6.07980000e+04, 6.07990000e+04], [6.08000000e+04, 6.08010000e+04, 6.08020000e+04, ..., 6.11970000e+04, 6.11980000e+04, 6.11990000e+04], ..., [5.88000000e+04, 5.88010000e+04, 5.88020000e+04, ..., 5.91970000e+04, 5.91980000e+04, 5.91990000e+04], [5.92000000e+04, 5.92010000e+04, 5.92020000e+04, ..., 5.95970000e+04, 5.95980000e+04, 5.95990000e+04], [5.96000000e+04, 5.96010000e+04, 5.96020000e+04, ..., 5.99970000e+04, 5.99980000e+04, 5.99990000e+04]], [[7.74596634e+01, 7.74603119e+01, 7.74609604e+01, ..., 7.77155075e+01, 7.77161484e+01, 7.77167892e+01], [7.77174377e+01, 7.77180786e+01, 7.77187271e+01, ..., 7.79724350e+01, 7.79730759e+01, 7.79737091e+01], [7.79743576e+01, 7.79749985e+01, 7.79756393e+01, ..., 7.82285156e+01, 7.82291489e+01, 7.82297897e+01], ..., [7.66811600e+01, 7.66818085e+01, 7.66824646e+01, ..., 7.69395905e+01, 7.69402390e+01, 7.69408875e+01], [7.69415359e+01, 7.69421844e+01, 7.69428406e+01, ..., 7.71990967e+01, 7.71997452e+01, 7.72003860e+01], [7.72010345e+01, 7.72016830e+01, 7.72023315e+01, ..., 7.74577332e+01, 7.74583740e+01, 7.74590225e+01]], [[1.00000000e+00, 0.00000000e+00, 1.00000000e+00, ..., 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [0.00000000e+00, 0.00000000e+00, 0.00000000e+00, ..., 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [0.00000000e+00, 0.00000000e+00, 0.00000000e+00, ..., 1.00000000e+00, 1.00000000e+00, 0.00000000e+00], ..., [1.00000000e+00, 1.00000000e+00, 1.00000000e+00, ..., 1.00000000e+00, 1.00000000e+00, 1.00000000e+00], [0.00000000e+00, 1.00000000e+00, 1.00000000e+00, ..., 0.00000000e+00, 0.00000000e+00, 1.00000000e+00], [0.00000000e+00, 1.00000000e+00, 0.00000000e+00, ..., 0.00000000e+00, 1.00000000e+00, 0.00000000e+00]]]], [[[[9.00000000e+04, 9.00010000e+04, 9.00020000e+04, ..., 9.03970000e+04, 9.03980000e+04, 9.03990000e+04], [9.04000000e+04, 9.04010000e+04, 9.04020000e+04, ..., 9.07970000e+04, 9.07980000e+04, 9.07990000e+04], [9.08000000e+04, 9.08010000e+04, 9.08020000e+04, ..., 9.11970000e+04, 9.11980000e+04, 9.11990000e+04], ..., [8.88000000e+04, 8.88010000e+04, 8.88020000e+04, ..., 8.91970000e+04, 8.91980000e+04, 8.91990000e+04], [8.92000000e+04, 8.92010000e+04, 8.92020000e+04, ..., 8.95970000e+04, 8.95980000e+04, 8.95990000e+04], [8.96000000e+04, 8.96010000e+04, 8.96020000e+04, ..., 8.99970000e+04, 8.99980000e+04, 8.99990000e+04]], [[9.48683319e+01, 9.48688583e+01, 9.48693848e+01, ..., 9.50773392e+01, 9.50778656e+01, 9.50783920e+01], [9.50789108e+01, 9.50794449e+01, 9.50799637e+01, ..., 9.52874603e+01, 9.52879868e+01, 9.52885132e+01], [9.52890320e+01, 9.52895584e+01, 9.52900848e+01, ..., 9.54971237e+01, 9.54976425e+01, 9.54981689e+01], ..., [9.42337494e+01, 9.42342834e+01, 9.42348175e+01, ..., 9.44441681e+01, 9.44446945e+01, 9.44452209e+01], [9.44457550e+01, 9.44462814e+01, 9.44468079e+01, ..., 9.46556931e+01, 9.46562195e+01, 9.46567535e+01], [9.46572800e+01, 9.46578064e+01, 9.46583328e+01, ..., 9.48667526e+01, 9.48672714e+01, 9.48678055e+01]], [[0.00000000e+00, 1.00000000e+00, 1.00000000e+00, ..., 0.00000000e+00, 1.00000000e+00, 1.00000000e+00], [1.00000000e+00, 1.00000000e+00, 0.00000000e+00, ..., 0.00000000e+00, 1.00000000e+00, 1.00000000e+00], [1.00000000e+00, 0.00000000e+00, 0.00000000e+00, ..., 1.00000000e+00, 0.00000000e+00, 0.00000000e+00], ..., [1.00000000e+00, 0.00000000e+00, 0.00000000e+00, ..., 1.00000000e+00, 0.00000000e+00, 1.00000000e+00], [0.00000000e+00, 1.00000000e+00, 1.00000000e+00, ..., 0.00000000e+00, 1.00000000e+00, 1.00000000e+00], [1.00000000e+00, 1.00000000e+00, 1.00000000e+00, ..., 1.00000000e+00, 0.00000000e+00, 0.00000000e+00]]], [[[9.00000000e+04, 9.00010000e+04, 9.00020000e+04, ..., 9.03970000e+04, 9.03980000e+04, 9.03990000e+04], [9.04000000e+04, 9.04010000e+04, 9.04020000e+04, ..., 9.07970000e+04, 9.07980000e+04, 9.07990000e+04], [9.08000000e+04, 9.08010000e+04, 9.08020000e+04, ..., 9.11970000e+04, 9.11980000e+04, 9.11990000e+04], ..., [8.88000000e+04, 8.88010000e+04, 8.88020000e+04, ..., 8.91970000e+04, 8.91980000e+04, 8.91990000e+04], [8.92000000e+04, 8.92010000e+04, 8.92020000e+04, ..., 8.95970000e+04, 8.95980000e+04, 8.95990000e+04], [8.96000000e+04, 8.96010000e+04, 8.96020000e+04, ..., 8.99970000e+04, 8.99980000e+04, 8.99990000e+04]], [[9.48683319e+01, 9.48688583e+01, 9.48693848e+01, ..., 9.50773392e+01, 9.50778656e+01, 9.50783920e+01], [9.50789108e+01, 9.50794449e+01, 9.50799637e+01, ..., 9.52874603e+01, 9.52879868e+01, 9.52885132e+01], [9.52890320e+01, 9.52895584e+01, 9.52900848e+01, ..., 9.54971237e+01, 9.54976425e+01, 9.54981689e+01], ..., [9.42337494e+01, 9.42342834e+01, 9.42348175e+01, ..., 9.44441681e+01, 9.44446945e+01, 9.44452209e+01], [9.44457550e+01, 9.44462814e+01, 9.44468079e+01, ..., 9.46556931e+01, 9.46562195e+01, 9.46567535e+01], [9.46572800e+01, 9.46578064e+01, 9.46583328e+01, ..., 9.48667526e+01, 9.48672714e+01, 9.48678055e+01]], [[1.00000000e+00, 0.00000000e+00, 1.00000000e+00, ..., 0.00000000e+00, 1.00000000e+00, 0.00000000e+00], [0.00000000e+00, 0.00000000e+00, 0.00000000e+00, ..., 1.00000000e+00, 1.00000000e+00, 1.00000000e+00], [1.00000000e+00, 1.00000000e+00, 1.00000000e+00, ..., 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], ..., [1.00000000e+00, 1.00000000e+00, 0.00000000e+00, ..., 1.00000000e+00, 0.00000000e+00, 0.00000000e+00], [1.00000000e+00, 0.00000000e+00, 1.00000000e+00, ..., 0.00000000e+00, 1.00000000e+00, 1.00000000e+00], [0.00000000e+00, 1.00000000e+00, 1.00000000e+00, ..., 1.00000000e+00, 0.00000000e+00, 0.00000000e+00]]]]], shape=(4, 2, 3, 300, 400), dtype=float32)
Load Mask and Standard Deviation#
As the stdevs and mask is saved into the tiff stack, you can load them as well.
[12]:
import scipp as sc
from scitiff.io import load_scitiff
img_with_stdev_and_mask_dg = load_scitiff('sample_img_with_stdev_and_mask.tiff')
img_with_stdev_and_mask = img_with_stdev_and_mask_dg['image']
display(img_with_stdev_and_mask)
tiled = img_with_stdev_and_mask['c', sc.scalar('intensities')]['t', 0]['z', 0].plot(title='Loaded Image (intensities), T=0, Z=0') / \
img_with_stdev_and_mask['c', sc.scalar('stdevs')]['t', 0]['z', 0].plot(title='Loaded Image (stdevs), T=0, Z=0') / \
img_with_stdev_and_mask['c', sc.scalar('mask')]['t', 0]['z', 0].plot(title='Loaded Image (mask), T=0, Z=0')
tiled
scipp.DataArray (10.99 MB)
- t: 4
- z: 2
- c: 3
- y: 300
- x: 400
- c(c)stringintensities, stdevs, mask
Values:
["intensities", "stdevs", "mask"] - t(t)int64s0, 1, 2, 3
Values:
array([0, 1, 2, 3]) - x(x)float64mm0.0, 1.003, ..., 398.997, 400.0
Values:
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Values:
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0.00000000e+00, 1.00000000e+00, 1.00000000e+00], [0.00000000e+00, 1.00000000e+00, 1.00000000e+00, ..., 1.00000000e+00, 0.00000000e+00, 0.00000000e+00]]]]], shape=(4, 2, 3, 300, 400), dtype=float32)
[12]:
There is a helper function that reassemble the data array with mask and variances from the loaded image.
[13]:
from scitiff.io import resolve_scitiff_channels
img_with_stdev_and_mask_resolved = resolve_scitiff_channels(img_with_stdev_and_mask)
display(img_with_stdev_and_mask_resolved)
img_with_stdev_and_mask_resolved['t', 0]['z', 0].plot(title='Loaded Image (intensities), T=0, Z=0')
/home/runner/work/scitiff/scitiff/.tox/docs/lib/python3.10/site-packages/scitiff/io.py:821: FutureWarning: Multi-channel images interpreted as `intensities`, `stdevs` and `mask` is not yet officially supported by ``Scitiff`` schema.
**Please do not use this function for production.**
**It may change in the future.**
_warn_about_multi_channel_images()
scipp.DataArray (8.25 MB)
- t: 4
- z: 2
- y: 300
- x: 400
- c()stringintensities
Values:
'intensities' - t(t)int64s0, 1, 2, 3
Values:
array([0, 1, 2, 3]) - x(x)float64mm0.0, 1.003, ..., 398.997, 400.0
Values:
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363.90977444, 364.9122807 , 365.91478697, 366.91729323, 367.9197995 , 368.92230576, 369.92481203, 370.9273183 , 371.92982456, 372.93233083, 373.93483709, 374.93734336, 375.93984962, 376.94235589, 377.94486216, 378.94736842, 379.94987469, 380.95238095, 381.95488722, 382.95739348, 383.95989975, 384.96240602, 385.96491228, 386.96741855, 387.96992481, 388.97243108, 389.97493734, 390.97744361, 391.97994987, 392.98245614, 393.98496241, 394.98746867, 395.98997494, 396.9924812 , 397.99498747, 398.99749373, 400. ]) - y(y)float64mm0.0, 1.003, ..., 298.997, 300.0
Values:
array([ 0. , 1.00334448, 2.00668896, 3.01003344, 4.01337793, 5.01672241, 6.02006689, 7.02341137, 8.02675585, 9.03010033, 10.03344482, 11.0367893 , 12.04013378, 13.04347826, 14.04682274, 15.05016722, 16.05351171, 17.05685619, 18.06020067, 19.06354515, 20.06688963, 21.07023411, 22.0735786 , 23.07692308, 24.08026756, 25.08361204, 26.08695652, 27.090301 , 28.09364548, 29.09698997, 30.10033445, 31.10367893, 32.10702341, 33.11036789, 34.11371237, 35.11705686, 36.12040134, 37.12374582, 38.1270903 , 39.13043478, 40.13377926, 41.13712375, 42.14046823, 43.14381271, 44.14715719, 45.15050167, 46.15384615, 47.15719064, 48.16053512, 49.1638796 , 50.16722408, 51.17056856, 52.17391304, 53.17725753, 54.18060201, 55.18394649, 56.18729097, 57.19063545, 58.19397993, 59.19732441, 60.2006689 , 61.20401338, 62.20735786, 63.21070234, 64.21404682, 65.2173913 , 66.22073579, 67.22408027, 68.22742475, 69.23076923, 70.23411371, 71.23745819, 72.24080268, 73.24414716, 74.24749164, 75.25083612, 76.2541806 , 77.25752508, 78.26086957, 79.26421405, 80.26755853, 81.27090301, 82.27424749, 83.27759197, 84.28093645, 85.28428094, 86.28762542, 87.2909699 , 88.29431438, 89.29765886, 90.30100334, 91.30434783, 92.30769231, 93.31103679, 94.31438127, 95.31772575, 96.32107023, 97.32441472, 98.3277592 , 99.33110368, 100.33444816, 101.33779264, 102.34113712, 103.34448161, 104.34782609, 105.35117057, 106.35451505, 107.35785953, 108.36120401, 109.36454849, 110.36789298, 111.37123746, 112.37458194, 113.37792642, 114.3812709 , 115.38461538, 116.38795987, 117.39130435, 118.39464883, 119.39799331, 120.40133779, 121.40468227, 122.40802676, 123.41137124, 124.41471572, 125.4180602 , 126.42140468, 127.42474916, 128.42809365, 129.43143813, 130.43478261, 131.43812709, 132.44147157, 133.44481605, 134.44816054, 135.45150502, 136.4548495 , 137.45819398, 138.46153846, 139.46488294, 140.46822742, 141.47157191, 142.47491639, 143.47826087, 144.48160535, 145.48494983, 146.48829431, 147.4916388 , 148.49498328, 149.49832776, 150.50167224, 151.50501672, 152.5083612 , 153.51170569, 154.51505017, 155.51839465, 156.52173913, 157.52508361, 158.52842809, 159.53177258, 160.53511706, 161.53846154, 162.54180602, 163.5451505 , 164.54849498, 165.55183946, 166.55518395, 167.55852843, 168.56187291, 169.56521739, 170.56856187, 171.57190635, 172.57525084, 173.57859532, 174.5819398 , 175.58528428, 176.58862876, 177.59197324, 178.59531773, 179.59866221, 180.60200669, 181.60535117, 182.60869565, 183.61204013, 184.61538462, 185.6187291 , 186.62207358, 187.62541806, 188.62876254, 189.63210702, 190.63545151, 191.63879599, 192.64214047, 193.64548495, 194.64882943, 195.65217391, 196.65551839, 197.65886288, 198.66220736, 199.66555184, 200.66889632, 201.6722408 , 202.67558528, 203.67892977, 204.68227425, 205.68561873, 206.68896321, 207.69230769, 208.69565217, 209.69899666, 210.70234114, 211.70568562, 212.7090301 , 213.71237458, 214.71571906, 215.71906355, 216.72240803, 217.72575251, 218.72909699, 219.73244147, 220.73578595, 221.73913043, 222.74247492, 223.7458194 , 224.74916388, 225.75250836, 226.75585284, 227.75919732, 228.76254181, 229.76588629, 230.76923077, 231.77257525, 232.77591973, 233.77926421, 234.7826087 , 235.78595318, 236.78929766, 237.79264214, 238.79598662, 239.7993311 , 240.80267559, 241.80602007, 242.80936455, 243.81270903, 244.81605351, 245.81939799, 246.82274247, 247.82608696, 248.82943144, 249.83277592, 250.8361204 , 251.83946488, 252.84280936, 253.84615385, 254.84949833, 255.85284281, 256.85618729, 257.85953177, 258.86287625, 259.86622074, 260.86956522, 261.8729097 , 262.87625418, 263.87959866, 264.88294314, 265.88628763, 266.88963211, 267.89297659, 268.89632107, 269.89966555, 270.90301003, 271.90635452, 272.909699 , 273.91304348, 274.91638796, 275.91973244, 276.92307692, 277.9264214 , 278.92976589, 279.93311037, 280.93645485, 281.93979933, 282.94314381, 283.94648829, 284.94983278, 285.95317726, 286.95652174, 287.95986622, 288.9632107 , 289.96655518, 290.96989967, 291.97324415, 292.97658863, 293.97993311, 294.98327759, 295.98662207, 296.98996656, 297.99331104, 298.99665552, 300. ]) - z(z)int64mm10, 20
Values:
array([10, 20])
- (t, z, y, x)float32counts0.0, 1.0, ..., 89998.0, 89999.0σ = 0.0, 0.31622776, ..., 94.86727, 94.867805
Values:
array([[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]], [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]]], [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]], [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]]], [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]], [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]]], [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]], [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]]]], shape=(4, 2, 300, 400), dtype=float32)
Variances (σ²):
array([[[[0.0000000e+00, 1.0000000e-01, 1.9999999e-01, ..., 3.9700001e+01, 3.9799999e+01, 3.9900002e+01], [4.0000000e+01, 4.0100002e+01, 4.0200005e+01, ..., 7.9699997e+01, 7.9799995e+01, 7.9899994e+01], [8.0000000e+01, 8.0100006e+01, 8.0199997e+01, ..., 1.1970001e+02, 1.1980001e+02, 1.1990001e+02], ..., [1.1880000e+04, 1.1880101e+04, 1.1880200e+04, ..., 1.1919699e+04, 1.1919800e+04, 1.1919901e+04], [1.1919999e+04, 1.1920101e+04, 1.1920201e+04, ..., 1.1959700e+04, 1.1959800e+04, 1.1959900e+04], [1.1960000e+04, 1.1960101e+04, 1.1960200e+04, ..., 1.1999700e+04, 1.1999799e+04, 1.1999901e+04]], [[0.0000000e+00, 1.0000000e-01, 1.9999999e-01, ..., 3.9700001e+01, 3.9799999e+01, 3.9900002e+01], [4.0000000e+01, 4.0100002e+01, 4.0200005e+01, ..., 7.9699997e+01, 7.9799995e+01, 7.9899994e+01], [8.0000000e+01, 8.0100006e+01, 8.0199997e+01, ..., 1.1970001e+02, 1.1980001e+02, 1.1990001e+02], ..., [1.1880000e+04, 1.1880101e+04, 1.1880200e+04, ..., 1.1919699e+04, 1.1919800e+04, 1.1919901e+04], [1.1919999e+04, 1.1920101e+04, 1.1920201e+04, ..., 1.1959700e+04, 1.1959800e+04, 1.1959900e+04], [1.1960000e+04, 1.1960101e+04, 1.1960200e+04, ..., 1.1999700e+04, 1.1999799e+04, 1.1999901e+04]]], [[[3.0000000e+03, 3.0001001e+03, 3.0002002e+03, ..., 3.0396997e+03, 3.0397998e+03, 3.0398999e+03], [3.0400002e+03, 3.0401003e+03, 3.0402000e+03, ..., 3.0797000e+03, 3.0797998e+03, 3.0799001e+03], [3.0800002e+03, 3.0801001e+03, 3.0802000e+03, ..., 3.1197000e+03, 3.1198000e+03, 3.1199004e+03], ..., [2.8800000e+03, 2.8801001e+03, 2.8802002e+03, ..., 2.9197000e+03, 2.9198003e+03, 2.9199004e+03], [2.9200000e+03, 2.9201003e+03, 2.9202002e+03, ..., 2.9597002e+03, 2.9598000e+03, 2.9599001e+03], [2.9600002e+03, 2.9601003e+03, 2.9602000e+03, ..., 2.9997000e+03, 2.9998000e+03, 2.9999001e+03]], [[3.0000000e+03, 3.0001001e+03, 3.0002002e+03, ..., 3.0396997e+03, 3.0397998e+03, 3.0398999e+03], [3.0400002e+03, 3.0401003e+03, 3.0402000e+03, ..., 3.0797000e+03, 3.0797998e+03, 3.0799001e+03], [3.0800002e+03, 3.0801001e+03, 3.0802000e+03, ..., 3.1197000e+03, 3.1198000e+03, 3.1199004e+03], ..., [2.8800000e+03, 2.8801001e+03, 2.8802002e+03, ..., 2.9197000e+03, 2.9198003e+03, 2.9199004e+03], [2.9200000e+03, 2.9201003e+03, 2.9202002e+03, ..., 2.9597002e+03, 2.9598000e+03, 2.9599001e+03], [2.9600002e+03, 2.9601003e+03, 2.9602000e+03, ..., 2.9997000e+03, 2.9998000e+03, 2.9999001e+03]]], [[[5.9999995e+03, 6.0001001e+03, 6.0002002e+03, ..., 6.0397002e+03, 6.0397998e+03, 6.0398994e+03], [6.0400000e+03, 6.0400996e+03, 6.0402007e+03, ..., 6.0797007e+03, 6.0798008e+03, 6.0798994e+03], [6.0800005e+03, 6.0801006e+03, 6.0802002e+03, ..., 6.1197007e+03, 6.1197998e+03, 6.1198999e+03], ..., [5.8800005e+03, 5.8800996e+03, 5.8802002e+03, ..., 5.9197007e+03, 5.9198003e+03, 5.9199004e+03], [5.9200000e+03, 5.9200996e+03, 5.9202007e+03, ..., 5.9597007e+03, 5.9598008e+03, 5.9598994e+03], [5.9599995e+03, 5.9601001e+03, 5.9602002e+03, ..., 5.9997002e+03, 5.9997998e+03, 5.9999004e+03]], [[5.9999995e+03, 6.0001001e+03, 6.0002002e+03, ..., 6.0397002e+03, 6.0397998e+03, 6.0398994e+03], [6.0400000e+03, 6.0400996e+03, 6.0402007e+03, ..., 6.0797007e+03, 6.0798008e+03, 6.0798994e+03], [6.0800005e+03, 6.0801006e+03, 6.0802002e+03, ..., 6.1197007e+03, 6.1197998e+03, 6.1198999e+03], ..., [5.8800005e+03, 5.8800996e+03, 5.8802002e+03, ..., 5.9197007e+03, 5.9198003e+03, 5.9199004e+03], [5.9200000e+03, 5.9200996e+03, 5.9202007e+03, ..., 5.9597007e+03, 5.9598008e+03, 5.9598994e+03], [5.9599995e+03, 5.9601001e+03, 5.9602002e+03, ..., 5.9997002e+03, 5.9997998e+03, 5.9999004e+03]]], [[[9.0000000e+03, 9.0001006e+03, 9.0002002e+03, ..., 9.0397002e+03, 9.0398008e+03, 9.0399004e+03], [9.0399990e+03, 9.0401006e+03, 9.0401992e+03, ..., 9.0797002e+03, 9.0798008e+03, 9.0799004e+03], [9.0800000e+03, 9.0800996e+03, 9.0802002e+03, ..., 9.1197002e+03, 9.1197998e+03, 9.1199004e+03], ..., [8.8800000e+03, 8.8801006e+03, 8.8802012e+03, ..., 8.9197012e+03, 8.9198008e+03, 8.9198994e+03], [8.9200010e+03, 8.9200996e+03, 8.9201992e+03, ..., 8.9597002e+03, 8.9597998e+03, 8.9599014e+03], [8.9600010e+03, 8.9601006e+03, 8.9602002e+03, ..., 8.9997012e+03, 8.9997988e+03, 8.9999004e+03]], [[9.0000000e+03, 9.0001006e+03, 9.0002002e+03, ..., 9.0397002e+03, 9.0398008e+03, 9.0399004e+03], [9.0399990e+03, 9.0401006e+03, 9.0401992e+03, ..., 9.0797002e+03, 9.0798008e+03, 9.0799004e+03], [9.0800000e+03, 9.0800996e+03, 9.0802002e+03, ..., 9.1197002e+03, 9.1197998e+03, 9.1199004e+03], ..., [8.8800000e+03, 8.8801006e+03, 8.8802012e+03, ..., 8.9197012e+03, 8.9198008e+03, 8.9198994e+03], [8.9200010e+03, 8.9200996e+03, 8.9201992e+03, ..., 8.9597002e+03, 8.9597998e+03, 8.9599014e+03], [8.9600010e+03, 8.9601006e+03, 8.9602002e+03, ..., 8.9997012e+03, 8.9997988e+03, 8.9999004e+03]]]], shape=(4, 2, 300, 400), dtype=float32)
- scitiff-mask(t, z, y, x)boolTrue, True, ..., False, False
Values:
array([[[[ True, True, False, ..., True, True, True], [False, False, False, ..., True, False, True], [False, False, True, ..., True, True, False], ..., [ True, False, True, ..., True, True, True], [ True, True, True, ..., False, False, True], [ True, False, False, ..., False, False, False]], [[False, False, False, ..., True, True, True], [ True, True, False, ..., False, False, False], [ True, True, False, ..., False, True, False], ..., [False, False, True, ..., False, False, False], [ True, True, False, ..., True, False, False], [ True, False, True, ..., False, True, False]]], [[[ True, True, True, ..., True, False, True], [ True, False, False, ..., True, True, True], [ True, False, True, ..., False, False, False], ..., [ True, False, True, ..., False, False, True], [ True, False, True, ..., False, True, True], [ True, True, False, ..., False, True, True]], [[False, False, True, ..., True, True, False], [False, True, False, ..., True, False, True], [False, True, False, ..., True, True, True], ..., [False, False, True, ..., False, False, True], [ True, False, True, ..., True, False, True], [False, False, True, ..., True, False, False]]], [[[ True, False, True, ..., True, False, False], [ True, False, False, ..., True, True, False], [False, True, True, ..., False, True, False], ..., [ True, True, False, ..., False, False, False], [False, False, True, ..., True, False, False], [ True, False, False, ..., True, False, True]], [[ True, False, True, ..., False, False, False], [False, False, False, ..., False, False, False], [False, False, False, ..., True, True, False], ..., [ True, True, True, ..., True, True, True], [False, True, True, ..., False, False, True], [False, True, False, ..., False, True, False]]], [[[False, True, True, ..., False, True, True], [ True, True, False, ..., False, True, True], [ True, False, False, ..., True, False, False], ..., [ True, False, False, ..., True, False, True], [False, True, True, ..., False, True, True], [ True, True, True, ..., True, False, False]], [[ True, False, True, ..., False, True, False], [False, False, False, ..., True, True, True], [ True, True, True, ..., False, False, False], ..., [ True, True, False, ..., True, False, False], [ True, False, True, ..., False, True, True], [False, True, True, ..., True, False, False]]]], shape=(4, 2, 300, 400))
[13]:
Or you can simply set the resolve_channels argument to be True and the loader will try reassembling the data array with mask and variances.
[14]:
import scipp as sc
from scitiff.io import load_scitiff
img_with_stdev_and_mask_dg = load_scitiff('sample_img_with_stdev_and_mask.tiff', resolve_channels=True)
img_stdev_and_mask_resolved_at_once = img_with_stdev_and_mask_dg['image']
display(img_stdev_and_mask_resolved_at_once)
img_stdev_and_mask_resolved_at_once['t', 0]['z', 0].plot(title='Masked Image, T=0, Z=0')
/home/runner/work/scitiff/scitiff/.tox/docs/lib/python3.10/site-packages/scitiff/io.py:821: FutureWarning: Multi-channel images interpreted as `intensities`, `stdevs` and `mask` is not yet officially supported by ``Scitiff`` schema.
**Please do not use this function for production.**
**It may change in the future.**
_warn_about_multi_channel_images()
scipp.DataArray (8.25 MB)
- t: 4
- z: 2
- y: 300
- x: 400
- c()stringintensities
Values:
'intensities' - t(t)int64s0, 1, 2, 3
Values:
array([0, 1, 2, 3]) - x(x)float64mm0.0, 1.003, ..., 398.997, 400.0
Values:
array([ 0. , 1.00250627, 2.00501253, 3.0075188 , 4.01002506, 5.01253133, 6.01503759, 7.01754386, 8.02005013, 9.02255639, 10.02506266, 11.02756892, 12.03007519, 13.03258145, 14.03508772, 15.03759398, 16.04010025, 17.04260652, 18.04511278, 19.04761905, 20.05012531, 21.05263158, 22.05513784, 23.05764411, 24.06015038, 25.06265664, 26.06516291, 27.06766917, 28.07017544, 29.0726817 , 30.07518797, 31.07769424, 32.0802005 , 33.08270677, 34.08521303, 35.0877193 , 36.09022556, 37.09273183, 38.0952381 , 39.09774436, 40.10025063, 41.10275689, 42.10526316, 43.10776942, 44.11027569, 45.11278195, 46.11528822, 47.11779449, 48.12030075, 49.12280702, 50.12531328, 51.12781955, 52.13032581, 53.13283208, 54.13533835, 55.13784461, 56.14035088, 57.14285714, 58.14536341, 59.14786967, 60.15037594, 61.15288221, 62.15538847, 63.15789474, 64.160401 , 65.16290727, 66.16541353, 67.1679198 , 68.17042607, 69.17293233, 70.1754386 , 71.17794486, 72.18045113, 73.18295739, 74.18546366, 75.18796992, 76.19047619, 77.19298246, 78.19548872, 79.19799499, 80.20050125, 81.20300752, 82.20551378, 83.20802005, 84.21052632, 85.21303258, 86.21553885, 87.21804511, 88.22055138, 89.22305764, 90.22556391, 91.22807018, 92.23057644, 93.23308271, 94.23558897, 95.23809524, 96.2406015 , 97.24310777, 98.24561404, 99.2481203 , 100.25062657, 101.25313283, 102.2556391 , 103.25814536, 104.26065163, 105.26315789, 106.26566416, 107.26817043, 108.27067669, 109.27318296, 110.27568922, 111.27819549, 112.28070175, 113.28320802, 114.28571429, 115.28822055, 116.29072682, 117.29323308, 118.29573935, 119.29824561, 120.30075188, 121.30325815, 122.30576441, 123.30827068, 124.31077694, 125.31328321, 126.31578947, 127.31829574, 128.32080201, 129.32330827, 130.32581454, 131.3283208 , 132.33082707, 133.33333333, 134.3358396 , 135.33834586, 136.34085213, 137.3433584 , 138.34586466, 139.34837093, 140.35087719, 141.35338346, 142.35588972, 143.35839599, 144.36090226, 145.36340852, 146.36591479, 147.36842105, 148.37092732, 149.37343358, 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363.90977444, 364.9122807 , 365.91478697, 366.91729323, 367.9197995 , 368.92230576, 369.92481203, 370.9273183 , 371.92982456, 372.93233083, 373.93483709, 374.93734336, 375.93984962, 376.94235589, 377.94486216, 378.94736842, 379.94987469, 380.95238095, 381.95488722, 382.95739348, 383.95989975, 384.96240602, 385.96491228, 386.96741855, 387.96992481, 388.97243108, 389.97493734, 390.97744361, 391.97994987, 392.98245614, 393.98496241, 394.98746867, 395.98997494, 396.9924812 , 397.99498747, 398.99749373, 400. ]) - y(y)float64mm0.0, 1.003, ..., 298.997, 300.0
Values:
array([ 0. , 1.00334448, 2.00668896, 3.01003344, 4.01337793, 5.01672241, 6.02006689, 7.02341137, 8.02675585, 9.03010033, 10.03344482, 11.0367893 , 12.04013378, 13.04347826, 14.04682274, 15.05016722, 16.05351171, 17.05685619, 18.06020067, 19.06354515, 20.06688963, 21.07023411, 22.0735786 , 23.07692308, 24.08026756, 25.08361204, 26.08695652, 27.090301 , 28.09364548, 29.09698997, 30.10033445, 31.10367893, 32.10702341, 33.11036789, 34.11371237, 35.11705686, 36.12040134, 37.12374582, 38.1270903 , 39.13043478, 40.13377926, 41.13712375, 42.14046823, 43.14381271, 44.14715719, 45.15050167, 46.15384615, 47.15719064, 48.16053512, 49.1638796 , 50.16722408, 51.17056856, 52.17391304, 53.17725753, 54.18060201, 55.18394649, 56.18729097, 57.19063545, 58.19397993, 59.19732441, 60.2006689 , 61.20401338, 62.20735786, 63.21070234, 64.21404682, 65.2173913 , 66.22073579, 67.22408027, 68.22742475, 69.23076923, 70.23411371, 71.23745819, 72.24080268, 73.24414716, 74.24749164, 75.25083612, 76.2541806 , 77.25752508, 78.26086957, 79.26421405, 80.26755853, 81.27090301, 82.27424749, 83.27759197, 84.28093645, 85.28428094, 86.28762542, 87.2909699 , 88.29431438, 89.29765886, 90.30100334, 91.30434783, 92.30769231, 93.31103679, 94.31438127, 95.31772575, 96.32107023, 97.32441472, 98.3277592 , 99.33110368, 100.33444816, 101.33779264, 102.34113712, 103.34448161, 104.34782609, 105.35117057, 106.35451505, 107.35785953, 108.36120401, 109.36454849, 110.36789298, 111.37123746, 112.37458194, 113.37792642, 114.3812709 , 115.38461538, 116.38795987, 117.39130435, 118.39464883, 119.39799331, 120.40133779, 121.40468227, 122.40802676, 123.41137124, 124.41471572, 125.4180602 , 126.42140468, 127.42474916, 128.42809365, 129.43143813, 130.43478261, 131.43812709, 132.44147157, 133.44481605, 134.44816054, 135.45150502, 136.4548495 , 137.45819398, 138.46153846, 139.46488294, 140.46822742, 141.47157191, 142.47491639, 143.47826087, 144.48160535, 145.48494983, 146.48829431, 147.4916388 , 148.49498328, 149.49832776, 150.50167224, 151.50501672, 152.5083612 , 153.51170569, 154.51505017, 155.51839465, 156.52173913, 157.52508361, 158.52842809, 159.53177258, 160.53511706, 161.53846154, 162.54180602, 163.5451505 , 164.54849498, 165.55183946, 166.55518395, 167.55852843, 168.56187291, 169.56521739, 170.56856187, 171.57190635, 172.57525084, 173.57859532, 174.5819398 , 175.58528428, 176.58862876, 177.59197324, 178.59531773, 179.59866221, 180.60200669, 181.60535117, 182.60869565, 183.61204013, 184.61538462, 185.6187291 , 186.62207358, 187.62541806, 188.62876254, 189.63210702, 190.63545151, 191.63879599, 192.64214047, 193.64548495, 194.64882943, 195.65217391, 196.65551839, 197.65886288, 198.66220736, 199.66555184, 200.66889632, 201.6722408 , 202.67558528, 203.67892977, 204.68227425, 205.68561873, 206.68896321, 207.69230769, 208.69565217, 209.69899666, 210.70234114, 211.70568562, 212.7090301 , 213.71237458, 214.71571906, 215.71906355, 216.72240803, 217.72575251, 218.72909699, 219.73244147, 220.73578595, 221.73913043, 222.74247492, 223.7458194 , 224.74916388, 225.75250836, 226.75585284, 227.75919732, 228.76254181, 229.76588629, 230.76923077, 231.77257525, 232.77591973, 233.77926421, 234.7826087 , 235.78595318, 236.78929766, 237.79264214, 238.79598662, 239.7993311 , 240.80267559, 241.80602007, 242.80936455, 243.81270903, 244.81605351, 245.81939799, 246.82274247, 247.82608696, 248.82943144, 249.83277592, 250.8361204 , 251.83946488, 252.84280936, 253.84615385, 254.84949833, 255.85284281, 256.85618729, 257.85953177, 258.86287625, 259.86622074, 260.86956522, 261.8729097 , 262.87625418, 263.87959866, 264.88294314, 265.88628763, 266.88963211, 267.89297659, 268.89632107, 269.89966555, 270.90301003, 271.90635452, 272.909699 , 273.91304348, 274.91638796, 275.91973244, 276.92307692, 277.9264214 , 278.92976589, 279.93311037, 280.93645485, 281.93979933, 282.94314381, 283.94648829, 284.94983278, 285.95317726, 286.95652174, 287.95986622, 288.9632107 , 289.96655518, 290.96989967, 291.97324415, 292.97658863, 293.97993311, 294.98327759, 295.98662207, 296.98996656, 297.99331104, 298.99665552, 300. ]) - z(z)int64mm10, 20
Values:
array([10, 20])
- (t, z, y, x)float32counts0.0, 1.0, ..., 89998.0, 89999.0σ = 0.0, 0.31622776, ..., 94.86727, 94.867805
Values:
array([[[[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]], [[0.00000e+00, 1.00000e+00, 2.00000e+00, ..., 3.97000e+02, 3.98000e+02, 3.99000e+02], [4.00000e+02, 4.01000e+02, 4.02000e+02, ..., 7.97000e+02, 7.98000e+02, 7.99000e+02], [8.00000e+02, 8.01000e+02, 8.02000e+02, ..., 1.19700e+03, 1.19800e+03, 1.19900e+03], ..., [1.18800e+05, 1.18801e+05, 1.18802e+05, ..., 1.19197e+05, 1.19198e+05, 1.19199e+05], [1.19200e+05, 1.19201e+05, 1.19202e+05, ..., 1.19597e+05, 1.19598e+05, 1.19599e+05], [1.19600e+05, 1.19601e+05, 1.19602e+05, ..., 1.19997e+05, 1.19998e+05, 1.19999e+05]]], [[[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]], [[3.00000e+04, 3.00010e+04, 3.00020e+04, ..., 3.03970e+04, 3.03980e+04, 3.03990e+04], [3.04000e+04, 3.04010e+04, 3.04020e+04, ..., 3.07970e+04, 3.07980e+04, 3.07990e+04], [3.08000e+04, 3.08010e+04, 3.08020e+04, ..., 3.11970e+04, 3.11980e+04, 3.11990e+04], ..., [2.88000e+04, 2.88010e+04, 2.88020e+04, ..., 2.91970e+04, 2.91980e+04, 2.91990e+04], [2.92000e+04, 2.92010e+04, 2.92020e+04, ..., 2.95970e+04, 2.95980e+04, 2.95990e+04], [2.96000e+04, 2.96010e+04, 2.96020e+04, ..., 2.99970e+04, 2.99980e+04, 2.99990e+04]]], [[[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]], [[6.00000e+04, 6.00010e+04, 6.00020e+04, ..., 6.03970e+04, 6.03980e+04, 6.03990e+04], [6.04000e+04, 6.04010e+04, 6.04020e+04, ..., 6.07970e+04, 6.07980e+04, 6.07990e+04], [6.08000e+04, 6.08010e+04, 6.08020e+04, ..., 6.11970e+04, 6.11980e+04, 6.11990e+04], ..., [5.88000e+04, 5.88010e+04, 5.88020e+04, ..., 5.91970e+04, 5.91980e+04, 5.91990e+04], [5.92000e+04, 5.92010e+04, 5.92020e+04, ..., 5.95970e+04, 5.95980e+04, 5.95990e+04], [5.96000e+04, 5.96010e+04, 5.96020e+04, ..., 5.99970e+04, 5.99980e+04, 5.99990e+04]]], [[[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]], [[9.00000e+04, 9.00010e+04, 9.00020e+04, ..., 9.03970e+04, 9.03980e+04, 9.03990e+04], [9.04000e+04, 9.04010e+04, 9.04020e+04, ..., 9.07970e+04, 9.07980e+04, 9.07990e+04], [9.08000e+04, 9.08010e+04, 9.08020e+04, ..., 9.11970e+04, 9.11980e+04, 9.11990e+04], ..., [8.88000e+04, 8.88010e+04, 8.88020e+04, ..., 8.91970e+04, 8.91980e+04, 8.91990e+04], [8.92000e+04, 8.92010e+04, 8.92020e+04, ..., 8.95970e+04, 8.95980e+04, 8.95990e+04], [8.96000e+04, 8.96010e+04, 8.96020e+04, ..., 8.99970e+04, 8.99980e+04, 8.99990e+04]]]], shape=(4, 2, 300, 400), dtype=float32)
Variances (σ²):
array([[[[0.0000000e+00, 1.0000000e-01, 1.9999999e-01, ..., 3.9700001e+01, 3.9799999e+01, 3.9900002e+01], [4.0000000e+01, 4.0100002e+01, 4.0200005e+01, ..., 7.9699997e+01, 7.9799995e+01, 7.9899994e+01], [8.0000000e+01, 8.0100006e+01, 8.0199997e+01, ..., 1.1970001e+02, 1.1980001e+02, 1.1990001e+02], ..., [1.1880000e+04, 1.1880101e+04, 1.1880200e+04, ..., 1.1919699e+04, 1.1919800e+04, 1.1919901e+04], [1.1919999e+04, 1.1920101e+04, 1.1920201e+04, ..., 1.1959700e+04, 1.1959800e+04, 1.1959900e+04], [1.1960000e+04, 1.1960101e+04, 1.1960200e+04, ..., 1.1999700e+04, 1.1999799e+04, 1.1999901e+04]], [[0.0000000e+00, 1.0000000e-01, 1.9999999e-01, ..., 3.9700001e+01, 3.9799999e+01, 3.9900002e+01], [4.0000000e+01, 4.0100002e+01, 4.0200005e+01, ..., 7.9699997e+01, 7.9799995e+01, 7.9899994e+01], [8.0000000e+01, 8.0100006e+01, 8.0199997e+01, ..., 1.1970001e+02, 1.1980001e+02, 1.1990001e+02], ..., [1.1880000e+04, 1.1880101e+04, 1.1880200e+04, ..., 1.1919699e+04, 1.1919800e+04, 1.1919901e+04], [1.1919999e+04, 1.1920101e+04, 1.1920201e+04, ..., 1.1959700e+04, 1.1959800e+04, 1.1959900e+04], [1.1960000e+04, 1.1960101e+04, 1.1960200e+04, ..., 1.1999700e+04, 1.1999799e+04, 1.1999901e+04]]], [[[3.0000000e+03, 3.0001001e+03, 3.0002002e+03, ..., 3.0396997e+03, 3.0397998e+03, 3.0398999e+03], [3.0400002e+03, 3.0401003e+03, 3.0402000e+03, ..., 3.0797000e+03, 3.0797998e+03, 3.0799001e+03], [3.0800002e+03, 3.0801001e+03, 3.0802000e+03, ..., 3.1197000e+03, 3.1198000e+03, 3.1199004e+03], ..., [2.8800000e+03, 2.8801001e+03, 2.8802002e+03, ..., 2.9197000e+03, 2.9198003e+03, 2.9199004e+03], [2.9200000e+03, 2.9201003e+03, 2.9202002e+03, ..., 2.9597002e+03, 2.9598000e+03, 2.9599001e+03], [2.9600002e+03, 2.9601003e+03, 2.9602000e+03, ..., 2.9997000e+03, 2.9998000e+03, 2.9999001e+03]], [[3.0000000e+03, 3.0001001e+03, 3.0002002e+03, ..., 3.0396997e+03, 3.0397998e+03, 3.0398999e+03], [3.0400002e+03, 3.0401003e+03, 3.0402000e+03, ..., 3.0797000e+03, 3.0797998e+03, 3.0799001e+03], [3.0800002e+03, 3.0801001e+03, 3.0802000e+03, ..., 3.1197000e+03, 3.1198000e+03, 3.1199004e+03], ..., [2.8800000e+03, 2.8801001e+03, 2.8802002e+03, ..., 2.9197000e+03, 2.9198003e+03, 2.9199004e+03], [2.9200000e+03, 2.9201003e+03, 2.9202002e+03, ..., 2.9597002e+03, 2.9598000e+03, 2.9599001e+03], [2.9600002e+03, 2.9601003e+03, 2.9602000e+03, ..., 2.9997000e+03, 2.9998000e+03, 2.9999001e+03]]], [[[5.9999995e+03, 6.0001001e+03, 6.0002002e+03, ..., 6.0397002e+03, 6.0397998e+03, 6.0398994e+03], [6.0400000e+03, 6.0400996e+03, 6.0402007e+03, ..., 6.0797007e+03, 6.0798008e+03, 6.0798994e+03], [6.0800005e+03, 6.0801006e+03, 6.0802002e+03, ..., 6.1197007e+03, 6.1197998e+03, 6.1198999e+03], ..., [5.8800005e+03, 5.8800996e+03, 5.8802002e+03, ..., 5.9197007e+03, 5.9198003e+03, 5.9199004e+03], [5.9200000e+03, 5.9200996e+03, 5.9202007e+03, ..., 5.9597007e+03, 5.9598008e+03, 5.9598994e+03], [5.9599995e+03, 5.9601001e+03, 5.9602002e+03, ..., 5.9997002e+03, 5.9997998e+03, 5.9999004e+03]], [[5.9999995e+03, 6.0001001e+03, 6.0002002e+03, ..., 6.0397002e+03, 6.0397998e+03, 6.0398994e+03], [6.0400000e+03, 6.0400996e+03, 6.0402007e+03, ..., 6.0797007e+03, 6.0798008e+03, 6.0798994e+03], [6.0800005e+03, 6.0801006e+03, 6.0802002e+03, ..., 6.1197007e+03, 6.1197998e+03, 6.1198999e+03], ..., [5.8800005e+03, 5.8800996e+03, 5.8802002e+03, ..., 5.9197007e+03, 5.9198003e+03, 5.9199004e+03], [5.9200000e+03, 5.9200996e+03, 5.9202007e+03, ..., 5.9597007e+03, 5.9598008e+03, 5.9598994e+03], [5.9599995e+03, 5.9601001e+03, 5.9602002e+03, ..., 5.9997002e+03, 5.9997998e+03, 5.9999004e+03]]], [[[9.0000000e+03, 9.0001006e+03, 9.0002002e+03, ..., 9.0397002e+03, 9.0398008e+03, 9.0399004e+03], [9.0399990e+03, 9.0401006e+03, 9.0401992e+03, ..., 9.0797002e+03, 9.0798008e+03, 9.0799004e+03], [9.0800000e+03, 9.0800996e+03, 9.0802002e+03, ..., 9.1197002e+03, 9.1197998e+03, 9.1199004e+03], ..., [8.8800000e+03, 8.8801006e+03, 8.8802012e+03, ..., 8.9197012e+03, 8.9198008e+03, 8.9198994e+03], [8.9200010e+03, 8.9200996e+03, 8.9201992e+03, ..., 8.9597002e+03, 8.9597998e+03, 8.9599014e+03], [8.9600010e+03, 8.9601006e+03, 8.9602002e+03, ..., 8.9997012e+03, 8.9997988e+03, 8.9999004e+03]], [[9.0000000e+03, 9.0001006e+03, 9.0002002e+03, ..., 9.0397002e+03, 9.0398008e+03, 9.0399004e+03], [9.0399990e+03, 9.0401006e+03, 9.0401992e+03, ..., 9.0797002e+03, 9.0798008e+03, 9.0799004e+03], [9.0800000e+03, 9.0800996e+03, 9.0802002e+03, ..., 9.1197002e+03, 9.1197998e+03, 9.1199004e+03], ..., [8.8800000e+03, 8.8801006e+03, 8.8802012e+03, ..., 8.9197012e+03, 8.9198008e+03, 8.9198994e+03], [8.9200010e+03, 8.9200996e+03, 8.9201992e+03, ..., 8.9597002e+03, 8.9597998e+03, 8.9599014e+03], [8.9600010e+03, 8.9601006e+03, 8.9602002e+03, ..., 8.9997012e+03, 8.9997988e+03, 8.9999004e+03]]]], shape=(4, 2, 300, 400), dtype=float32)
- scitiff-mask(t, z, y, x)boolTrue, True, ..., False, False
Values:
array([[[[ True, True, False, ..., True, True, True], [False, False, False, ..., True, False, True], [False, False, True, ..., True, True, False], ..., [ True, False, True, ..., True, True, True], [ True, True, True, ..., False, False, True], [ True, False, False, ..., False, False, False]], [[False, False, False, ..., True, True, True], [ True, True, False, ..., False, False, False], [ True, True, False, ..., False, True, False], ..., [False, False, True, ..., False, False, False], [ True, True, False, ..., True, False, False], [ True, False, True, ..., False, True, False]]], [[[ True, True, True, ..., True, False, True], [ True, False, False, ..., True, True, True], [ True, False, True, ..., False, False, False], ..., [ True, False, True, ..., False, False, True], [ True, False, True, ..., False, True, True], [ True, True, False, ..., False, True, True]], [[False, False, True, ..., True, True, False], [False, True, False, ..., True, False, True], [False, True, False, ..., True, True, True], ..., [False, False, True, ..., False, False, True], [ True, False, True, ..., True, False, True], [False, False, True, ..., True, False, False]]], [[[ True, False, True, ..., True, False, False], [ True, False, False, ..., True, True, False], [False, True, True, ..., False, True, False], ..., [ True, True, False, ..., False, False, False], [False, False, True, ..., True, False, False], [ True, False, False, ..., True, False, True]], [[ True, False, True, ..., False, False, False], [False, False, False, ..., False, False, False], [False, False, False, ..., True, True, False], ..., [ True, True, True, ..., True, True, True], [False, True, True, ..., False, False, True], [False, True, False, ..., False, True, False]]], [[[False, True, True, ..., False, True, True], [ True, True, False, ..., False, True, True], [ True, False, False, ..., True, False, False], ..., [ True, False, False, ..., True, False, True], [False, True, True, ..., False, True, True], [ True, True, True, ..., True, False, False]], [[ True, False, True, ..., False, True, False], [False, False, False, ..., True, True, True], [ True, True, True, ..., False, False, False], ..., [ True, True, False, ..., True, False, False], [ True, False, True, ..., False, True, True], [False, True, True, ..., True, False, False]]]], shape=(4, 2, 300, 400))
[14]:
