scitiff.io

Functions

concat_mask_as_channels(da, mask_name)	Concatenate intensities and a mask into channel dimension.
concat_stdevs_and_mask_as_channels(da[, ...])	Concatenate intensities, stdevs and a mask into channel dimension.
concat_stdevs_as_channels(da)	Concatenate intensities and stdevs into channel dimension.
extract_metadata(dg)
load_scitiff(file_path, *[, squeeze, ...])	Load an image in SCITIFF format to a scipp data structure.
resolve_scitiff_channels(scitiff_image)	Slice channel dimension and recombine the DataArray.
save_scitiff(dg, file_path, *[, ...])	Save an image in scipp data structure to a SCITIFF format including metadata.
to_scitiff_image(da, *[, ...])	Modify dimnesions and shapes to match the scitiff image schema.

Classes

Channel(value[, names, module, qualname, ...])

Exceptions

ImageJMetadataNotFoundWarning	Warning for missing ImageJ metadata.
IncompatibleDtypeWarning	Warning for incompatible dtype.
ScitiffMetadataWarning	Warning for broken scitiff metadata.
UnmatchedMetadataWarning	Warning for unmatched metadata.