DMSC Integration Testing

instrument = 'nmx', coda_proposal_id = '999999'
pathfinder = <function pathfinder.<locals>.<lambda> at 0x7f14276896c0>

    def test_run_chexus(
        instrument: str,
        coda_proposal_id: str | None,
        pathfinder: Callable[..., Path],
    ) -> None:
        path = pathfinder(proposal_id=coda_proposal_id, instrument=instrument)
        reader = chexus.read_hdf5(path, locking=False)
        group = next(reader)
        validators = chexus.validators.base_validators(has_scipp=True)
        results = chexus.validate(group, validators=validators)
        report = chexus.report(results=results)
        logging.info(report)
        logging.info(chexus.make_fileinfo(path))
        if chexus.has_violations(results):
>           raise AssertionError(f"Validation failed for {path}: \n" + report)
E           AssertionError: Validation failed for /ess/data/coda/999999/raw/coda_nmx_999999_00020204.hdf: 
E           Violations
E           ----------
E           depends_on_missing @ /entry/.ESS_monitor/MISSING_JSON_topology_2
E           NX_class_attr_missing @ /entry/.ESS_monitor
E           event_data_has_event_datasets @ /entry/.ESS_monitor/beam_monitor_1/monitor_events (NXevent_data must have event dataset(s))
E           
E           
E           Summary
E           -------
E           depends_on_missing: 1/21
E           depends_on_target_missing: 0/70
E           float_dataset_units_missing: 0/299
E           group_has_units: 0/150
E           index_has_units: 0/93
E           mask_has_units: 0/0
E           non_numeric_dataset_has_units: 0/229
E           NX_class_attr_missing: 1/150
E           NX_class_invalid: 0/149
E           NX_class_is_legacy: 0/149
E           transformation_depends_on_missing: 0/21
E           transformation_offset_units_missing: 0/28
E           units_invalid: 0/594
E           NXlog_has_value: 0/67
E           detector_numbers are not unique: 0/3
E           event_id is not subset of associated detector_numbers: 0/3
E           Shape of pixel offsets does not correspond to detector_number: 0/3
E           event_index_too_small: 0/5
E           event_data_has_event_datasets: 1/6
E           NXtransformations_child_not_NX_NUMBER: 0/50
E           chopper_frequency_unit_invalid: 0/3
E           dataset_units_check: 0/594
E           transformation_offset_units_invalid: 0/29
E           transformation_value_units_invalid: 0/50
E           
E           Total: 3/2766

tests/chexus/chexus_test.py:25: AssertionError

instrument = 'nmx', coda_proposal_id = '999999'
pathfinder = <function pathfinder.<locals>.<lambda> at 0x7ff69e7156c0>

    def test_run_chexus(
        instrument: str,
        coda_proposal_id: str | None,
        pathfinder: Callable[..., Path],
    ) -> None:
        path = pathfinder(proposal_id=coda_proposal_id, instrument=instrument)
        reader = chexus.read_hdf5(path, locking=False)
        group = next(reader)
        validators = chexus.validators.base_validators(has_scipp=True)
        results = chexus.validate(group, validators=validators)
        report = chexus.report(results=results)
        logging.info(report)
        logging.info(chexus.make_fileinfo(path))
        if chexus.has_violations(results):
>           raise AssertionError(f"Validation failed for {path}: \n" + report)
E           AssertionError: Validation failed for /ess/data/coda/999999/raw/coda_nmx_999999_00020204.hdf: 
E           Violations
E           ----------
E           depends_on_missing @ /entry/.ESS_monitor/MISSING_JSON_topology_2
E           NX_class_attr_missing @ /entry/.ESS_monitor
E           event_data_has_event_datasets @ /entry/.ESS_monitor/beam_monitor_1/monitor_events (NXevent_data must have event dataset(s))
E           
E           
E           Summary
E           -------
E           depends_on_missing: 1/21
E           depends_on_target_missing: 0/70
E           float_dataset_units_missing: 0/299
E           group_has_units: 0/150
E           index_has_units: 0/93
E           mask_has_units: 0/0
E           non_numeric_dataset_has_units: 0/229
E           NX_class_attr_missing: 1/150
E           NX_class_invalid: 0/149
E           NX_class_is_legacy: 0/149
E           transformation_depends_on_missing: 0/21
E           transformation_offset_units_missing: 0/28
E           units_invalid: 0/594
E           NXlog_has_value: 0/67
E           detector_numbers are not unique: 0/3
E           event_id is not subset of associated detector_numbers: 0/3
E           Shape of pixel offsets does not correspond to detector_number: 0/3
E           event_index_too_small: 0/5
E           event_data_has_event_datasets: 1/6
E           NXtransformations_child_not_NX_NUMBER: 0/50
E           chopper_frequency_unit_invalid: 0/3
E           dataset_units_check: 0/594
E           transformation_offset_units_invalid: 0/29
E           transformation_value_units_invalid: 0/50
E           
E           Total: 3/2766

tests/chexus/chexus_test.py:25: AssertionError

instrument = 'nmx', coda_proposal_id = '999999'
pathfinder = <function pathfinder.<locals>.<lambda> at 0x7f4dada456c0>

    def test_run_chexus(
        instrument: str,
        coda_proposal_id: str | None,
        pathfinder: Callable[..., Path],
    ) -> None:
        path = pathfinder(proposal_id=coda_proposal_id, instrument=instrument)
        reader = chexus.read_hdf5(path, locking=False)
        group = next(reader)
        validators = chexus.validators.base_validators(has_scipp=True)
        results = chexus.validate(group, validators=validators)
        report = chexus.report(results=results)
        logging.info(report)
        logging.info(chexus.make_fileinfo(path))
        if chexus.has_violations(results):
>           raise AssertionError(f"Validation failed for {path}: \n" + report)
E           AssertionError: Validation failed for /ess/data/coda/999999/raw/coda_nmx_999999_00020116.hdf: 
E           Violations
E           ----------
E           depends_on_missing @ /entry/.ESS_monitor/MISSING_JSON_topology_2
E           NX_class_attr_missing @ /entry/.ESS_monitor
E           event_data_has_event_datasets @ /entry/.ESS_monitor/beam_monitor_1/monitor_events (NXevent_data must have event dataset(s))
E           
E           
E           Summary
E           -------
E           depends_on_missing: 1/21
E           depends_on_target_missing: 0/70
E           float_dataset_units_missing: 0/299
E           group_has_units: 0/150
E           index_has_units: 0/93
E           mask_has_units: 0/0
E           non_numeric_dataset_has_units: 0/229
E           NX_class_attr_missing: 1/150
E           NX_class_invalid: 0/149
E           NX_class_is_legacy: 0/149
E           transformation_depends_on_missing: 0/21
E           transformation_offset_units_missing: 0/28
E           units_invalid: 0/594
E           NXlog_has_value: 0/67
E           detector_numbers are not unique: 0/3
E           event_id is not subset of associated detector_numbers: 0/3
E           Shape of pixel offsets does not correspond to detector_number: 0/3
E           event_index_too_small: 0/5
E           event_data_has_event_datasets: 1/6
E           NXtransformations_child_not_NX_NUMBER: 0/50
E           chopper_frequency_unit_invalid: 0/3
E           dataset_units_check: 0/594
E           transformation_offset_units_invalid: 0/29
E           transformation_value_units_invalid: 0/50
E           
E           Total: 3/2766

tests/chexus/chexus_test.py:25: AssertionError

instrument = 'nmx', coda_proposal_id = '999999'
pathfinder = <function pathfinder.<locals>.<lambda> at 0x7efc0685d6c0>

    def test_run_chexus(
        instrument: str,
        coda_proposal_id: str | None,
        pathfinder: Callable[..., Path],
    ) -> None:
        path = pathfinder(proposal_id=coda_proposal_id, instrument=instrument)
        reader = chexus.read_hdf5(path, locking=False)
        group = next(reader)
        validators = chexus.validators.base_validators(has_scipp=True)
        results = chexus.validate(group, validators=validators)
        report = chexus.report(results=results)
        logging.info(report)
        logging.info(chexus.make_fileinfo(path))
        if chexus.has_violations(results):
>           raise AssertionError(f"Validation failed for {path}: \n" + report)
E           AssertionError: Validation failed for /ess/data/coda/999999/raw/coda_nmx_999999_00019973.hdf: 
E           Violations
E           ----------
E           depends_on_missing @ /entry/.ESS_monitor/MISSING_JSON_topology_2
E           NX_class_attr_missing @ /entry/.ESS_monitor
E           event_data_has_event_datasets @ /entry/.ESS_monitor/beam_monitor_1/monitor_events (NXevent_data must have event dataset(s))
E           
E           
E           Summary
E           -------
E           depends_on_missing: 1/21
E           depends_on_target_missing: 0/70
E           float_dataset_units_missing: 0/299
E           group_has_units: 0/150
E           index_has_units: 0/93
E           mask_has_units: 0/0
E           non_numeric_dataset_has_units: 0/229
E           NX_class_attr_missing: 1/150
E           NX_class_invalid: 0/149
E           NX_class_is_legacy: 0/149
E           transformation_depends_on_missing: 0/21
E           transformation_offset_units_missing: 0/28
E           units_invalid: 0/594
E           NXlog_has_value: 0/67
E           detector_numbers are not unique: 0/3
E           event_id is not subset of associated detector_numbers: 0/3
E           Shape of pixel offsets does not correspond to detector_number: 0/3
E           event_index_too_small: 0/5
E           event_data_has_event_datasets: 1/6
E           NXtransformations_child_not_NX_NUMBER: 0/50
E           chopper_frequency_unit_invalid: 0/3
E           dataset_units_check: 0/594
E           transformation_offset_units_invalid: 0/29
E           transformation_value_units_invalid: 0/50
E           
E           Total: 3/2766

tests/chexus/chexus_test.py:25: AssertionError