workflow =
coda_nexus_file_path = PosixPath('/ess/data/coda/999999/raw/coda_tbl_999999_00023345.hdf')
detector_name = 'he3_detector_bank1'
@pytest.mark.parametrize(
"detector_name",
[
"he3_detector_bank0",
"he3_detector_bank1",
"multiblade_detector",
"ngem_detector",
"timepix3_detector",
],
)
def test_can_compute_tof(
workflow: sciline.Pipeline,
coda_nexus_file_path: Path,
detector_name: str,
) -> None:
workflow[Filename[SampleRun]] = coda_nexus_file_path
workflow[NeXusDetectorName] = detector_name
workflow[TimeOfFlightLookupTableFilename] = tbl_tof_lookup_table_no_choppers()
> result = workflow.compute(TofDetector[SampleRun])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/nexusfiles-scipp/tbl/tbl_reduction_test.py:45:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:191: in compute
return self.get(tp, **kwargs).compute(reporter=reporter)
^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self =
keys = ess.reduce.time_of_flight.types.TofDetector[ess.imaging.types.SampleRun]
def get(
self,
keys: type | Iterable[type] | "UnionType" | str, # noqa: UP037 (needed by Sphinx)
*,
scheduler: Scheduler | None = None,
handler: ErrorHandler | None = None,
max_depth: int = 4,
) -> TaskGraph:
"""
Return a TaskGraph for the given keys.
Parameters
----------
keys:
Type to compute the result for.
Can be a single type or an iterable of types.
scheduler:
Optional scheduler to use for computing the result. If not given, a
:py:class:`NaiveScheduler` is used if `dask` is not installed,
otherwise dask's threaded scheduler is used.
handler:
Handler for unsatisfied requirements. If not provided,
:py:class:`HandleAsBuildTimeException` is used, which raises an exception.
During development and debugging it can be helpful to use a handler that
raises an exception only when the graph is computed. This can be achieved
by passing :py:class:`HandleAsComputeTimeException` as the handler.
max_depth:
Maximum depth to show in the dependency tree when reporting errors.
"""
if multi := _is_multiple_keys(keys):
targets = tuple(keys) # type: ignore[arg-type]
else:
targets = (keys,)
try:
graph = to_task_graph(self, targets=targets, handler=handler) # type: ignore[arg-type]
except UnsatisfiedRequirement as e:
missing = e.args[1]
nx_graph = self.underlying_graph
if missing in nx_graph:
paths = _find_paths_to_targets(nx_graph, missing, targets)
info = _format_paths_msg(nx_graph, paths)
else:
nodes = ", ".join(map(key_name, nx_graph.nodes))
info = f'{e} Requested node not in graph. Did you mean one of: {nodes}?'
# Not raising `from e` because that includes noisy traceback of internals,
# which are not relevant to the user.
> raise type(e)(f'{info}\n\n') from None
E sciline.handler.UnsatisfiedRequirement: Missing input node 'LookupTableRelativeErrorThreshold'. Affects requested targets (via providers given in parentheses):
E 1. LookupTableRelativeErrorThreshold → (ess.reduce.time_of_flight.eto_to_tof.mask_large_uncertainty_in_lut_detector) → ErrorLimitedTofLookupTable[NXdetector] → (ess.reduce.time_of_flight.eto_to_tof.detector_time_of_flight_data) → TofDetector[SampleRun]
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:281: UnsatisfiedRequirement
Test: nexusfiles-scipp|tbl|can_compute_tof|he3_detector_bank1
workflow =
coda_nexus_file_path = PosixPath('/ess/data/coda/999999/raw/coda_tbl_999999_00023205.hdf')
detector_name = 'he3_detector_bank1'
@pytest.mark.parametrize(
"detector_name",
[
"he3_detector_bank0",
"he3_detector_bank1",
"multiblade_detector",
"ngem_detector",
"timepix3_detector",
],
)
def test_can_compute_tof(
workflow: sciline.Pipeline,
coda_nexus_file_path: Path,
detector_name: str,
) -> None:
workflow[Filename[SampleRun]] = coda_nexus_file_path
workflow[NeXusDetectorName] = detector_name
workflow[TimeOfFlightLookupTableFilename] = tbl_tof_lookup_table_no_choppers()
> result = workflow.compute(TofDetector[SampleRun])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/nexusfiles-scipp/tbl/tbl_reduction_test.py:45:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:191: in compute
return self.get(tp, **kwargs).compute(reporter=reporter)
^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self =
keys = ess.reduce.time_of_flight.types.TofDetector[ess.imaging.types.SampleRun]
def get(
self,
keys: type | Iterable[type] | "UnionType" | str, # noqa: UP037 (needed by Sphinx)
*,
scheduler: Scheduler | None = None,
handler: ErrorHandler | None = None,
max_depth: int = 4,
) -> TaskGraph:
"""
Return a TaskGraph for the given keys.
Parameters
----------
keys:
Type to compute the result for.
Can be a single type or an iterable of types.
scheduler:
Optional scheduler to use for computing the result. If not given, a
:py:class:`NaiveScheduler` is used if `dask` is not installed,
otherwise dask's threaded scheduler is used.
handler:
Handler for unsatisfied requirements. If not provided,
:py:class:`HandleAsBuildTimeException` is used, which raises an exception.
During development and debugging it can be helpful to use a handler that
raises an exception only when the graph is computed. This can be achieved
by passing :py:class:`HandleAsComputeTimeException` as the handler.
max_depth:
Maximum depth to show in the dependency tree when reporting errors.
"""
if multi := _is_multiple_keys(keys):
targets = tuple(keys) # type: ignore[arg-type]
else:
targets = (keys,)
try:
graph = to_task_graph(self, targets=targets, handler=handler) # type: ignore[arg-type]
except UnsatisfiedRequirement as e:
missing = e.args[1]
nx_graph = self.underlying_graph
if missing in nx_graph:
paths = _find_paths_to_targets(nx_graph, missing, targets)
info = _format_paths_msg(nx_graph, paths)
else:
nodes = ", ".join(map(key_name, nx_graph.nodes))
info = f'{e} Requested node not in graph. Did you mean one of: {nodes}?'
# Not raising `from e` because that includes noisy traceback of internals,
# which are not relevant to the user.
> raise type(e)(f'{info}\n\n') from None
E sciline.handler.UnsatisfiedRequirement: Missing input node 'LookupTableRelativeErrorThreshold'. Affects requested targets (via providers given in parentheses):
E 1. LookupTableRelativeErrorThreshold → (ess.reduce.time_of_flight.eto_to_tof.mask_large_uncertainty_in_lut_detector) → ErrorLimitedTofLookupTable[NXdetector] → (ess.reduce.time_of_flight.eto_to_tof.detector_time_of_flight_data) → TofDetector[SampleRun]
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:281: UnsatisfiedRequirement
workflow =
coda_nexus_file_path = PosixPath('/ess/data/coda/999999/raw/coda_tbl_999999_00023065.hdf')
detector_name = 'he3_detector_bank1'
@pytest.mark.parametrize(
"detector_name",
[
"he3_detector_bank0",
"he3_detector_bank1",
"multiblade_detector",
"ngem_detector",
"timepix3_detector",
],
)
def test_can_compute_tof(
workflow: sciline.Pipeline,
coda_nexus_file_path: Path,
detector_name: str,
) -> None:
workflow[Filename[SampleRun]] = coda_nexus_file_path
workflow[NeXusDetectorName] = detector_name
workflow[TimeOfFlightLookupTableFilename] = tbl_tof_lookup_table_no_choppers()
> result = workflow.compute(TofDetector[SampleRun])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/nexusfiles-scipp/tbl/tbl_reduction_test.py:45:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:191: in compute
return self.get(tp, **kwargs).compute(reporter=reporter)
^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self =
keys = ess.reduce.time_of_flight.types.TofDetector[ess.imaging.types.SampleRun]
def get(
self,
keys: type | Iterable[type] | "UnionType" | str, # noqa: UP037 (needed by Sphinx)
*,
scheduler: Scheduler | None = None,
handler: ErrorHandler | None = None,
max_depth: int = 4,
) -> TaskGraph:
"""
Return a TaskGraph for the given keys.
Parameters
----------
keys:
Type to compute the result for.
Can be a single type or an iterable of types.
scheduler:
Optional scheduler to use for computing the result. If not given, a
:py:class:`NaiveScheduler` is used if `dask` is not installed,
otherwise dask's threaded scheduler is used.
handler:
Handler for unsatisfied requirements. If not provided,
:py:class:`HandleAsBuildTimeException` is used, which raises an exception.
During development and debugging it can be helpful to use a handler that
raises an exception only when the graph is computed. This can be achieved
by passing :py:class:`HandleAsComputeTimeException` as the handler.
max_depth:
Maximum depth to show in the dependency tree when reporting errors.
"""
if multi := _is_multiple_keys(keys):
targets = tuple(keys) # type: ignore[arg-type]
else:
targets = (keys,)
try:
graph = to_task_graph(self, targets=targets, handler=handler) # type: ignore[arg-type]
except UnsatisfiedRequirement as e:
missing = e.args[1]
nx_graph = self.underlying_graph
if missing in nx_graph:
paths = _find_paths_to_targets(nx_graph, missing, targets)
info = _format_paths_msg(nx_graph, paths)
else:
nodes = ", ".join(map(key_name, nx_graph.nodes))
info = f'{e} Requested node not in graph. Did you mean one of: {nodes}?'
# Not raising `from e` because that includes noisy traceback of internals,
# which are not relevant to the user.
> raise type(e)(f'{info}\n\n') from None
E sciline.handler.UnsatisfiedRequirement: Missing input node 'LookupTableRelativeErrorThreshold'. Affects requested targets (via providers given in parentheses):
E 1. LookupTableRelativeErrorThreshold → (ess.reduce.time_of_flight.eto_to_tof.mask_large_uncertainty_in_lut_detector) → ErrorLimitedTofLookupTable[NXdetector] → (ess.reduce.time_of_flight.eto_to_tof.detector_time_of_flight_data) → TofDetector[SampleRun]
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:281: UnsatisfiedRequirement
workflow =
coda_nexus_file_path = PosixPath('/ess/data/coda/999999/raw/coda_tbl_999999_00022918.hdf')
detector_name = 'he3_detector_bank1'
@pytest.mark.parametrize(
"detector_name",
[
"he3_detector_bank0",
"he3_detector_bank1",
"multiblade_detector",
"ngem_detector",
"timepix3_detector",
],
)
def test_can_compute_tof(
workflow: sciline.Pipeline,
coda_nexus_file_path: Path,
detector_name: str,
) -> None:
workflow[Filename[SampleRun]] = coda_nexus_file_path
workflow[NeXusDetectorName] = detector_name
workflow[TimeOfFlightLookupTableFilename] = tbl_tof_lookup_table_no_choppers()
> result = workflow.compute(TofDetector[SampleRun])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/nexusfiles-scipp/tbl/tbl_reduction_test.py:45:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:191: in compute
return self.get(tp, **kwargs).compute(reporter=reporter)
^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self =
keys = ess.reduce.time_of_flight.types.TofDetector[ess.imaging.types.SampleRun]
def get(
self,
keys: type | Iterable[type] | "UnionType" | str, # noqa: UP037 (needed by Sphinx)
*,
scheduler: Scheduler | None = None,
handler: ErrorHandler | None = None,
max_depth: int = 4,
) -> TaskGraph:
"""
Return a TaskGraph for the given keys.
Parameters
----------
keys:
Type to compute the result for.
Can be a single type or an iterable of types.
scheduler:
Optional scheduler to use for computing the result. If not given, a
:py:class:`NaiveScheduler` is used if `dask` is not installed,
otherwise dask's threaded scheduler is used.
handler:
Handler for unsatisfied requirements. If not provided,
:py:class:`HandleAsBuildTimeException` is used, which raises an exception.
During development and debugging it can be helpful to use a handler that
raises an exception only when the graph is computed. This can be achieved
by passing :py:class:`HandleAsComputeTimeException` as the handler.
max_depth:
Maximum depth to show in the dependency tree when reporting errors.
"""
if multi := _is_multiple_keys(keys):
targets = tuple(keys) # type: ignore[arg-type]
else:
targets = (keys,)
try:
graph = to_task_graph(self, targets=targets, handler=handler) # type: ignore[arg-type]
except UnsatisfiedRequirement as e:
missing = e.args[1]
nx_graph = self.underlying_graph
if missing in nx_graph:
paths = _find_paths_to_targets(nx_graph, missing, targets)
info = _format_paths_msg(nx_graph, paths)
else:
nodes = ", ".join(map(key_name, nx_graph.nodes))
info = f'{e} Requested node not in graph. Did you mean one of: {nodes}?'
# Not raising `from e` because that includes noisy traceback of internals,
# which are not relevant to the user.
> raise type(e)(f'{info}\n\n') from None
E sciline.handler.UnsatisfiedRequirement: Missing input node 'LookupTableRelativeErrorThreshold'. Affects requested targets (via providers given in parentheses):
E 1. LookupTableRelativeErrorThreshold → (ess.reduce.time_of_flight.eto_to_tof.mask_large_uncertainty_in_lut_detector) → ErrorLimitedTofLookupTable[NXdetector] → (ess.reduce.time_of_flight.eto_to_tof.detector_time_of_flight_data) → TofDetector[SampleRun]
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:281: UnsatisfiedRequirement
workflow =
coda_nexus_file_path = PosixPath('/ess/data/coda/999999/raw/coda_tbl_999999_00022777.hdf')
detector_name = 'he3_detector_bank1'
@pytest.mark.parametrize(
"detector_name",
[
"he3_detector_bank0",
"he3_detector_bank1",
"multiblade_detector",
"ngem_detector",
"timepix3_detector",
],
)
def test_can_compute_tof(
workflow: sciline.Pipeline,
coda_nexus_file_path: Path,
detector_name: str,
) -> None:
workflow[Filename[SampleRun]] = coda_nexus_file_path
workflow[NeXusDetectorName] = detector_name
workflow[TimeOfFlightLookupTableFilename] = tbl_tof_lookup_table_no_choppers()
> result = workflow.compute(TofDetector[SampleRun])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/nexusfiles-scipp/tbl/tbl_reduction_test.py:45:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:191: in compute
return self.get(tp, **kwargs).compute(reporter=reporter)
^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self =
keys = ess.reduce.time_of_flight.types.TofDetector[ess.imaging.types.SampleRun]
def get(
self,
keys: type | Iterable[type] | "UnionType" | str, # noqa: UP037 (needed by Sphinx)
*,
scheduler: Scheduler | None = None,
handler: ErrorHandler | None = None,
max_depth: int = 4,
) -> TaskGraph:
"""
Return a TaskGraph for the given keys.
Parameters
----------
keys:
Type to compute the result for.
Can be a single type or an iterable of types.
scheduler:
Optional scheduler to use for computing the result. If not given, a
:py:class:`NaiveScheduler` is used if `dask` is not installed,
otherwise dask's threaded scheduler is used.
handler:
Handler for unsatisfied requirements. If not provided,
:py:class:`HandleAsBuildTimeException` is used, which raises an exception.
During development and debugging it can be helpful to use a handler that
raises an exception only when the graph is computed. This can be achieved
by passing :py:class:`HandleAsComputeTimeException` as the handler.
max_depth:
Maximum depth to show in the dependency tree when reporting errors.
"""
if multi := _is_multiple_keys(keys):
targets = tuple(keys) # type: ignore[arg-type]
else:
targets = (keys,)
try:
graph = to_task_graph(self, targets=targets, handler=handler) # type: ignore[arg-type]
except UnsatisfiedRequirement as e:
missing = e.args[1]
nx_graph = self.underlying_graph
if missing in nx_graph:
paths = _find_paths_to_targets(nx_graph, missing, targets)
info = _format_paths_msg(nx_graph, paths)
else:
nodes = ", ".join(map(key_name, nx_graph.nodes))
info = f'{e} Requested node not in graph. Did you mean one of: {nodes}?'
# Not raising `from e` because that includes noisy traceback of internals,
# which are not relevant to the user.
> raise type(e)(f'{info}\n\n') from None
E sciline.handler.UnsatisfiedRequirement: Missing input node 'LookupTableRelativeErrorThreshold'. Affects requested targets (via providers given in parentheses):
E 1. LookupTableRelativeErrorThreshold → (ess.reduce.time_of_flight.eto_to_tof.mask_large_uncertainty_in_lut_detector) → ErrorLimitedTofLookupTable[NXdetector] → (ess.reduce.time_of_flight.eto_to_tof.detector_time_of_flight_data) → TofDetector[SampleRun]
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:281: UnsatisfiedRequirement
workflow =
coda_nexus_file_path = PosixPath('/ess/data/coda/999999/raw/coda_tbl_999999_00022637.hdf')
detector_name = 'he3_detector_bank1'
@pytest.mark.parametrize(
"detector_name",
[
"he3_detector_bank0",
"he3_detector_bank1",
"multiblade_detector",
"ngem_detector",
"timepix3_detector",
],
)
def test_can_compute_tof(
workflow: sciline.Pipeline,
coda_nexus_file_path: Path,
detector_name: str,
) -> None:
workflow[Filename[SampleRun]] = coda_nexus_file_path
workflow[NeXusDetectorName] = detector_name
workflow[TimeOfFlightLookupTableFilename] = tbl_tof_lookup_table_no_choppers()
> result = workflow.compute(TofDetector[SampleRun])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/nexusfiles-scipp/tbl/tbl_reduction_test.py:45:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:191: in compute
return self.get(tp, **kwargs).compute(reporter=reporter)
^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self =
keys = ess.reduce.time_of_flight.types.TofDetector[ess.imaging.types.SampleRun]
def get(
self,
keys: type | Iterable[type] | "UnionType" | str, # noqa: UP037 (needed by Sphinx)
*,
scheduler: Scheduler | None = None,
handler: ErrorHandler | None = None,
max_depth: int = 4,
) -> TaskGraph:
"""
Return a TaskGraph for the given keys.
Parameters
----------
keys:
Type to compute the result for.
Can be a single type or an iterable of types.
scheduler:
Optional scheduler to use for computing the result. If not given, a
:py:class:`NaiveScheduler` is used if `dask` is not installed,
otherwise dask's threaded scheduler is used.
handler:
Handler for unsatisfied requirements. If not provided,
:py:class:`HandleAsBuildTimeException` is used, which raises an exception.
During development and debugging it can be helpful to use a handler that
raises an exception only when the graph is computed. This can be achieved
by passing :py:class:`HandleAsComputeTimeException` as the handler.
max_depth:
Maximum depth to show in the dependency tree when reporting errors.
"""
if multi := _is_multiple_keys(keys):
targets = tuple(keys) # type: ignore[arg-type]
else:
targets = (keys,)
try:
graph = to_task_graph(self, targets=targets, handler=handler) # type: ignore[arg-type]
except UnsatisfiedRequirement as e:
missing = e.args[1]
nx_graph = self.underlying_graph
if missing in nx_graph:
paths = _find_paths_to_targets(nx_graph, missing, targets)
info = _format_paths_msg(nx_graph, paths)
else:
nodes = ", ".join(map(key_name, nx_graph.nodes))
info = f'{e} Requested node not in graph. Did you mean one of: {nodes}?'
# Not raising `from e` because that includes noisy traceback of internals,
# which are not relevant to the user.
> raise type(e)(f'{info}\n\n') from None
E sciline.handler.UnsatisfiedRequirement: Missing input node 'LookupTableRelativeErrorThreshold'. Affects requested targets (via providers given in parentheses):
E 1. LookupTableRelativeErrorThreshold → (ess.reduce.time_of_flight.eto_to_tof.mask_large_uncertainty_in_lut_detector) → ErrorLimitedTofLookupTable[NXdetector] → (ess.reduce.time_of_flight.eto_to_tof.detector_time_of_flight_data) → TofDetector[SampleRun]
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:281: UnsatisfiedRequirement
workflow =
coda_nexus_file_path = PosixPath('/ess/data/coda/999999/raw/coda_tbl_999999_00022464.hdf')
detector_name = 'he3_detector_bank1'
@pytest.mark.parametrize(
"detector_name",
[
"he3_detector_bank0",
"he3_detector_bank1",
"multiblade_detector",
"ngem_detector",
"timepix3_detector",
],
)
def test_can_compute_tof(
workflow: sciline.Pipeline,
coda_nexus_file_path: Path,
detector_name: str,
) -> None:
workflow[Filename[SampleRun]] = coda_nexus_file_path
workflow[NeXusDetectorName] = detector_name
workflow[TimeOfFlightLookupTableFilename] = tbl_tof_lookup_table_no_choppers()
> result = workflow.compute(TofDetector[SampleRun])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/nexusfiles-scipp/tbl/tbl_reduction_test.py:45:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:191: in compute
return self.get(tp, **kwargs).compute(reporter=reporter)
^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self =
keys = ess.reduce.time_of_flight.types.TofDetector[ess.imaging.types.SampleRun]
def get(
self,
keys: type | Iterable[type] | "UnionType" | str, # noqa: UP037 (needed by Sphinx)
*,
scheduler: Scheduler | None = None,
handler: ErrorHandler | None = None,
max_depth: int = 4,
) -> TaskGraph:
"""
Return a TaskGraph for the given keys.
Parameters
----------
keys:
Type to compute the result for.
Can be a single type or an iterable of types.
scheduler:
Optional scheduler to use for computing the result. If not given, a
:py:class:`NaiveScheduler` is used if `dask` is not installed,
otherwise dask's threaded scheduler is used.
handler:
Handler for unsatisfied requirements. If not provided,
:py:class:`HandleAsBuildTimeException` is used, which raises an exception.
During development and debugging it can be helpful to use a handler that
raises an exception only when the graph is computed. This can be achieved
by passing :py:class:`HandleAsComputeTimeException` as the handler.
max_depth:
Maximum depth to show in the dependency tree when reporting errors.
"""
if multi := _is_multiple_keys(keys):
targets = tuple(keys) # type: ignore[arg-type]
else:
targets = (keys,)
try:
graph = to_task_graph(self, targets=targets, handler=handler) # type: ignore[arg-type]
except UnsatisfiedRequirement as e:
missing = e.args[1]
nx_graph = self.underlying_graph
if missing in nx_graph:
paths = _find_paths_to_targets(nx_graph, missing, targets)
info = _format_paths_msg(nx_graph, paths)
else:
nodes = ", ".join(map(key_name, nx_graph.nodes))
info = f'{e} Requested node not in graph. Did you mean one of: {nodes}?'
# Not raising `from e` because that includes noisy traceback of internals,
# which are not relevant to the user.
> raise type(e)(f'{info}\n\n') from None
E sciline.handler.UnsatisfiedRequirement: Missing input node 'LookupTableRelativeErrorThreshold'. Affects requested targets (via providers given in parentheses):
E 1. LookupTableRelativeErrorThreshold → (ess.reduce.time_of_flight.eto_to_tof.mask_large_uncertainty_in_lut_detector) → ErrorLimitedTofLookupTable[NXdetector] → (ess.reduce.time_of_flight.eto_to_tof.detector_time_of_flight_data) → TofDetector[SampleRun]
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:281: UnsatisfiedRequirement
workflow =
coda_nexus_file_path = PosixPath('/ess/data/coda/999999/raw/coda_tbl_999999_00022317.hdf')
detector_name = 'he3_detector_bank1'
@pytest.mark.parametrize(
"detector_name",
[
"he3_detector_bank0",
"he3_detector_bank1",
"multiblade_detector",
"ngem_detector",
"timepix3_detector",
],
)
def test_can_compute_tof(
workflow: sciline.Pipeline,
coda_nexus_file_path: Path,
detector_name: str,
) -> None:
workflow[Filename[SampleRun]] = coda_nexus_file_path
workflow[NeXusDetectorName] = detector_name
workflow[TimeOfFlightLookupTableFilename] = tbl_tof_lookup_table_no_choppers()
> result = workflow.compute(TofDetector[SampleRun])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/nexusfiles-scipp/tbl/tbl_reduction_test.py:45:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:191: in compute
return self.get(tp, **kwargs).compute(reporter=reporter)
^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self =
keys = ess.reduce.time_of_flight.types.TofDetector[ess.imaging.types.SampleRun]
def get(
self,
keys: type | Iterable[type] | "UnionType" | str, # noqa: UP037 (needed by Sphinx)
*,
scheduler: Scheduler | None = None,
handler: ErrorHandler | None = None,
max_depth: int = 4,
) -> TaskGraph:
"""
Return a TaskGraph for the given keys.
Parameters
----------
keys:
Type to compute the result for.
Can be a single type or an iterable of types.
scheduler:
Optional scheduler to use for computing the result. If not given, a
:py:class:`NaiveScheduler` is used if `dask` is not installed,
otherwise dask's threaded scheduler is used.
handler:
Handler for unsatisfied requirements. If not provided,
:py:class:`HandleAsBuildTimeException` is used, which raises an exception.
During development and debugging it can be helpful to use a handler that
raises an exception only when the graph is computed. This can be achieved
by passing :py:class:`HandleAsComputeTimeException` as the handler.
max_depth:
Maximum depth to show in the dependency tree when reporting errors.
"""
if multi := _is_multiple_keys(keys):
targets = tuple(keys) # type: ignore[arg-type]
else:
targets = (keys,)
try:
graph = to_task_graph(self, targets=targets, handler=handler) # type: ignore[arg-type]
except UnsatisfiedRequirement as e:
missing = e.args[1]
nx_graph = self.underlying_graph
if missing in nx_graph:
paths = _find_paths_to_targets(nx_graph, missing, targets)
info = _format_paths_msg(nx_graph, paths)
else:
nodes = ", ".join(map(key_name, nx_graph.nodes))
info = f'{e} Requested node not in graph. Did you mean one of: {nodes}?'
# Not raising `from e` because that includes noisy traceback of internals,
# which are not relevant to the user.
> raise type(e)(f'{info}\n\n') from None
E sciline.handler.UnsatisfiedRequirement: Missing input node 'LookupTableRelativeErrorThreshold'. Affects requested targets (via providers given in parentheses):
E 1. LookupTableRelativeErrorThreshold → (ess.reduce.time_of_flight.eto_to_tof.mask_large_uncertainty_in_lut_detector) → ErrorLimitedTofLookupTable[NXdetector] → (ess.reduce.time_of_flight.eto_to_tof.detector_time_of_flight_data) → TofDetector[SampleRun]
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:281: UnsatisfiedRequirement
workflow =
coda_nexus_file_path = PosixPath('/ess/data/coda/999999/raw/coda_tbl_999999_00022177.hdf')
detector_name = 'he3_detector_bank1'
@pytest.mark.parametrize(
"detector_name",
[
"he3_detector_bank0",
"he3_detector_bank1",
"multiblade_detector",
"ngem_detector",
"timepix3_detector",
],
)
def test_can_compute_tof(
workflow: sciline.Pipeline,
coda_nexus_file_path: Path,
detector_name: str,
) -> None:
workflow[Filename[SampleRun]] = coda_nexus_file_path
workflow[NeXusDetectorName] = detector_name
workflow[TimeOfFlightLookupTableFilename] = tbl_tof_lookup_table_no_choppers()
> result = workflow.compute(TofDetector[SampleRun])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/nexusfiles-scipp/tbl/tbl_reduction_test.py:45:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:191: in compute
return self.get(tp, **kwargs).compute(reporter=reporter)
^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self =
keys = ess.reduce.time_of_flight.types.TofDetector[ess.imaging.types.SampleRun]
def get(
self,
keys: type | Iterable[type] | "UnionType" | str, # noqa: UP037 (needed by Sphinx)
*,
scheduler: Scheduler | None = None,
handler: ErrorHandler | None = None,
max_depth: int = 4,
) -> TaskGraph:
"""
Return a TaskGraph for the given keys.
Parameters
----------
keys:
Type to compute the result for.
Can be a single type or an iterable of types.
scheduler:
Optional scheduler to use for computing the result. If not given, a
:py:class:`NaiveScheduler` is used if `dask` is not installed,
otherwise dask's threaded scheduler is used.
handler:
Handler for unsatisfied requirements. If not provided,
:py:class:`HandleAsBuildTimeException` is used, which raises an exception.
During development and debugging it can be helpful to use a handler that
raises an exception only when the graph is computed. This can be achieved
by passing :py:class:`HandleAsComputeTimeException` as the handler.
max_depth:
Maximum depth to show in the dependency tree when reporting errors.
"""
if multi := _is_multiple_keys(keys):
targets = tuple(keys) # type: ignore[arg-type]
else:
targets = (keys,)
try:
graph = to_task_graph(self, targets=targets, handler=handler) # type: ignore[arg-type]
except UnsatisfiedRequirement as e:
missing = e.args[1]
nx_graph = self.underlying_graph
if missing in nx_graph:
paths = _find_paths_to_targets(nx_graph, missing, targets)
info = _format_paths_msg(nx_graph, paths)
else:
nodes = ", ".join(map(key_name, nx_graph.nodes))
info = f'{e} Requested node not in graph. Did you mean one of: {nodes}?'
# Not raising `from e` because that includes noisy traceback of internals,
# which are not relevant to the user.
> raise type(e)(f'{info}\n\n') from None
E sciline.handler.UnsatisfiedRequirement: Missing input node 'LookupTableRelativeErrorThreshold'. Affects requested targets (via providers given in parentheses):
E 1. LookupTableRelativeErrorThreshold → (ess.reduce.time_of_flight.eto_to_tof.mask_large_uncertainty_in_lut_detector) → ErrorLimitedTofLookupTable[NXdetector] → (ess.reduce.time_of_flight.eto_to_tof.detector_time_of_flight_data) → TofDetector[SampleRun]
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:281: UnsatisfiedRequirement
workflow =
coda_nexus_file_path = PosixPath('/ess/data/coda/999999/raw/coda_tbl_999999_00022030.hdf')
detector_name = 'he3_detector_bank1'
@pytest.mark.parametrize(
"detector_name",
[
"he3_detector_bank0",
"he3_detector_bank1",
"multiblade_detector",
"ngem_detector",
"timepix3_detector",
],
)
def test_can_compute_tof(
workflow: sciline.Pipeline,
coda_nexus_file_path: Path,
detector_name: str,
) -> None:
workflow[Filename[SampleRun]] = coda_nexus_file_path
workflow[NeXusDetectorName] = detector_name
workflow[TimeOfFlightLookupTableFilename] = tbl_tof_lookup_table_no_choppers()
> result = workflow.compute(TofDetector[SampleRun])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/nexusfiles-scipp/tbl/tbl_reduction_test.py:45:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:191: in compute
return self.get(tp, **kwargs).compute(reporter=reporter)
^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self =
keys = ess.reduce.time_of_flight.types.TofDetector[ess.imaging.types.SampleRun]
def get(
self,
keys: type | Iterable[type] | "UnionType" | str, # noqa: UP037 (needed by Sphinx)
*,
scheduler: Scheduler | None = None,
handler: ErrorHandler | None = None,
max_depth: int = 4,
) -> TaskGraph:
"""
Return a TaskGraph for the given keys.
Parameters
----------
keys:
Type to compute the result for.
Can be a single type or an iterable of types.
scheduler:
Optional scheduler to use for computing the result. If not given, a
:py:class:`NaiveScheduler` is used if `dask` is not installed,
otherwise dask's threaded scheduler is used.
handler:
Handler for unsatisfied requirements. If not provided,
:py:class:`HandleAsBuildTimeException` is used, which raises an exception.
During development and debugging it can be helpful to use a handler that
raises an exception only when the graph is computed. This can be achieved
by passing :py:class:`HandleAsComputeTimeException` as the handler.
max_depth:
Maximum depth to show in the dependency tree when reporting errors.
"""
if multi := _is_multiple_keys(keys):
targets = tuple(keys) # type: ignore[arg-type]
else:
targets = (keys,)
try:
graph = to_task_graph(self, targets=targets, handler=handler) # type: ignore[arg-type]
except UnsatisfiedRequirement as e:
missing = e.args[1]
nx_graph = self.underlying_graph
if missing in nx_graph:
paths = _find_paths_to_targets(nx_graph, missing, targets)
info = _format_paths_msg(nx_graph, paths)
else:
nodes = ", ".join(map(key_name, nx_graph.nodes))
info = f'{e} Requested node not in graph. Did you mean one of: {nodes}?'
# Not raising `from e` because that includes noisy traceback of internals,
# which are not relevant to the user.
> raise type(e)(f'{info}\n\n') from None
E sciline.handler.UnsatisfiedRequirement: Missing input node 'LookupTableRelativeErrorThreshold'. Affects requested targets (via providers given in parentheses):
E 1. LookupTableRelativeErrorThreshold → (ess.reduce.time_of_flight.eto_to_tof.mask_large_uncertainty_in_lut_detector) → ErrorLimitedTofLookupTable[NXdetector] → (ess.reduce.time_of_flight.eto_to_tof.detector_time_of_flight_data) → TofDetector[SampleRun]
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:281: UnsatisfiedRequirement
workflow =
coda_nexus_file_path = PosixPath('/ess/data/coda/999999/raw/coda_tbl_999999_00021890.hdf')
detector_name = 'he3_detector_bank1'
@pytest.mark.parametrize(
"detector_name",
[
"he3_detector_bank0",
"he3_detector_bank1",
"multiblade_detector",
"ngem_detector",
"timepix3_detector",
],
)
def test_can_compute_tof(
workflow: sciline.Pipeline,
coda_nexus_file_path: Path,
detector_name: str,
) -> None:
workflow[Filename[SampleRun]] = coda_nexus_file_path
workflow[NeXusDetectorName] = detector_name
workflow[TimeOfFlightLookupTableFilename] = tbl_tof_lookup_table_no_choppers()
> result = workflow.compute(TofDetector[SampleRun])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/nexusfiles-scipp/tbl/tbl_reduction_test.py:45:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:191: in compute
return self.get(tp, **kwargs).compute(reporter=reporter)
^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self =
keys = ess.reduce.time_of_flight.types.TofDetector[ess.imaging.types.SampleRun]
def get(
self,
keys: type | Iterable[type] | "UnionType" | str, # noqa: UP037 (needed by Sphinx)
*,
scheduler: Scheduler | None = None,
handler: ErrorHandler | None = None,
max_depth: int = 4,
) -> TaskGraph:
"""
Return a TaskGraph for the given keys.
Parameters
----------
keys:
Type to compute the result for.
Can be a single type or an iterable of types.
scheduler:
Optional scheduler to use for computing the result. If not given, a
:py:class:`NaiveScheduler` is used if `dask` is not installed,
otherwise dask's threaded scheduler is used.
handler:
Handler for unsatisfied requirements. If not provided,
:py:class:`HandleAsBuildTimeException` is used, which raises an exception.
During development and debugging it can be helpful to use a handler that
raises an exception only when the graph is computed. This can be achieved
by passing :py:class:`HandleAsComputeTimeException` as the handler.
max_depth:
Maximum depth to show in the dependency tree when reporting errors.
"""
if multi := _is_multiple_keys(keys):
targets = tuple(keys) # type: ignore[arg-type]
else:
targets = (keys,)
try:
graph = to_task_graph(self, targets=targets, handler=handler) # type: ignore[arg-type]
except UnsatisfiedRequirement as e:
missing = e.args[1]
nx_graph = self.underlying_graph
if missing in nx_graph:
paths = _find_paths_to_targets(nx_graph, missing, targets)
info = _format_paths_msg(nx_graph, paths)
else:
nodes = ", ".join(map(key_name, nx_graph.nodes))
info = f'{e} Requested node not in graph. Did you mean one of: {nodes}?'
# Not raising `from e` because that includes noisy traceback of internals,
# which are not relevant to the user.
> raise type(e)(f'{info}\n\n') from None
E sciline.handler.UnsatisfiedRequirement: Missing input node 'LookupTableRelativeErrorThreshold'. Affects requested targets (via providers given in parentheses):
E 1. LookupTableRelativeErrorThreshold → (ess.reduce.time_of_flight.eto_to_tof.mask_large_uncertainty_in_lut_detector) → ErrorLimitedTofLookupTable[NXdetector] → (ess.reduce.time_of_flight.eto_to_tof.detector_time_of_flight_data) → TofDetector[SampleRun]
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:281: UnsatisfiedRequirement
workflow =
coda_nexus_file_path = PosixPath('/ess/data/coda/999999/raw/coda_tbl_999999_00021757.hdf')
detector_name = 'he3_detector_bank1'
@pytest.mark.parametrize(
"detector_name",
[
"he3_detector_bank0",
"he3_detector_bank1",
"multiblade_detector",
"ngem_detector",
"timepix3_detector",
],
)
def test_can_compute_tof(
workflow: sciline.Pipeline,
coda_nexus_file_path: Path,
detector_name: str,
) -> None:
workflow[Filename[SampleRun]] = coda_nexus_file_path
workflow[NeXusDetectorName] = detector_name
workflow[TimeOfFlightLookupTableFilename] = tbl_tof_lookup_table_no_choppers()
> result = workflow.compute(TofDetector[SampleRun])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/nexusfiles-scipp/tbl/tbl_reduction_test.py:45:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:191: in compute
return self.get(tp, **kwargs).compute(reporter=reporter)
^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self =
keys = ess.reduce.time_of_flight.types.TofDetector[ess.imaging.types.SampleRun]
def get(
self,
keys: type | Iterable[type] | "UnionType" | str, # noqa: UP037 (needed by Sphinx)
*,
scheduler: Scheduler | None = None,
handler: ErrorHandler | None = None,
max_depth: int = 4,
) -> TaskGraph:
"""
Return a TaskGraph for the given keys.
Parameters
----------
keys:
Type to compute the result for.
Can be a single type or an iterable of types.
scheduler:
Optional scheduler to use for computing the result. If not given, a
:py:class:`NaiveScheduler` is used if `dask` is not installed,
otherwise dask's threaded scheduler is used.
handler:
Handler for unsatisfied requirements. If not provided,
:py:class:`HandleAsBuildTimeException` is used, which raises an exception.
During development and debugging it can be helpful to use a handler that
raises an exception only when the graph is computed. This can be achieved
by passing :py:class:`HandleAsComputeTimeException` as the handler.
max_depth:
Maximum depth to show in the dependency tree when reporting errors.
"""
if multi := _is_multiple_keys(keys):
targets = tuple(keys) # type: ignore[arg-type]
else:
targets = (keys,)
try:
graph = to_task_graph(self, targets=targets, handler=handler) # type: ignore[arg-type]
except UnsatisfiedRequirement as e:
missing = e.args[1]
nx_graph = self.underlying_graph
if missing in nx_graph:
paths = _find_paths_to_targets(nx_graph, missing, targets)
info = _format_paths_msg(nx_graph, paths)
else:
nodes = ", ".join(map(key_name, nx_graph.nodes))
info = f'{e} Requested node not in graph. Did you mean one of: {nodes}?'
# Not raising `from e` because that includes noisy traceback of internals,
# which are not relevant to the user.
> raise type(e)(f'{info}\n\n') from None
E sciline.handler.UnsatisfiedRequirement: Missing input node 'LookupTableRelativeErrorThreshold'. Affects requested targets (via providers given in parentheses):
E 1. LookupTableRelativeErrorThreshold → (ess.reduce.time_of_flight.eto_to_tof.mask_large_uncertainty_in_lut_detector) → ErrorLimitedTofLookupTable[NXdetector] → (ess.reduce.time_of_flight.eto_to_tof.detector_time_of_flight_data) → TofDetector[SampleRun]
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:281: UnsatisfiedRequirement
workflow =
coda_nexus_file_path = PosixPath('/ess/data/coda/999999/raw/coda_tbl_999999_00021477.hdf')
detector_name = 'he3_detector_bank1'
@pytest.mark.parametrize(
"detector_name",
[
"he3_detector_bank0",
"he3_detector_bank1",
"multiblade_detector",
"ngem_detector",
"timepix3_detector",
],
)
def test_can_compute_tof(
workflow: sciline.Pipeline,
coda_nexus_file_path: Path,
detector_name: str,
) -> None:
workflow[Filename[SampleRun]] = coda_nexus_file_path
workflow[NeXusDetectorName] = detector_name
workflow[TimeOfFlightLookupTableFilename] = tbl_tof_lookup_table_no_choppers()
> result = workflow.compute(TofDetector[SampleRun])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/nexusfiles-scipp/tbl/tbl_reduction_test.py:45:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:191: in compute
return self.get(tp, **kwargs).compute(reporter=reporter)
^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self =
keys = ess.reduce.time_of_flight.types.TofDetector[ess.imaging.types.SampleRun]
def get(
self,
keys: type | Iterable[type] | "UnionType" | str, # noqa: UP037 (needed by Sphinx)
*,
scheduler: Scheduler | None = None,
handler: ErrorHandler | None = None,
max_depth: int = 4,
) -> TaskGraph:
"""
Return a TaskGraph for the given keys.
Parameters
----------
keys:
Type to compute the result for.
Can be a single type or an iterable of types.
scheduler:
Optional scheduler to use for computing the result. If not given, a
:py:class:`NaiveScheduler` is used if `dask` is not installed,
otherwise dask's threaded scheduler is used.
handler:
Handler for unsatisfied requirements. If not provided,
:py:class:`HandleAsBuildTimeException` is used, which raises an exception.
During development and debugging it can be helpful to use a handler that
raises an exception only when the graph is computed. This can be achieved
by passing :py:class:`HandleAsComputeTimeException` as the handler.
max_depth:
Maximum depth to show in the dependency tree when reporting errors.
"""
if multi := _is_multiple_keys(keys):
targets = tuple(keys) # type: ignore[arg-type]
else:
targets = (keys,)
try:
graph = to_task_graph(self, targets=targets, handler=handler) # type: ignore[arg-type]
except UnsatisfiedRequirement as e:
missing = e.args[1]
nx_graph = self.underlying_graph
if missing in nx_graph:
paths = _find_paths_to_targets(nx_graph, missing, targets)
info = _format_paths_msg(nx_graph, paths)
else:
nodes = ", ".join(map(key_name, nx_graph.nodes))
info = f'{e} Requested node not in graph. Did you mean one of: {nodes}?'
# Not raising `from e` because that includes noisy traceback of internals,
# which are not relevant to the user.
> raise type(e)(f'{info}\n\n') from None
E sciline.handler.UnsatisfiedRequirement: Missing input node 'LookupTableRelativeErrorThreshold'. Affects requested targets (via providers given in parentheses):
E 1. LookupTableRelativeErrorThreshold → (ess.reduce.time_of_flight.eto_to_tof.mask_large_uncertainty_in_lut_detector) → ErrorLimitedTofLookupTable[NXdetector] → (ess.reduce.time_of_flight.eto_to_tof.detector_time_of_flight_data) → TofDetector[SampleRun]
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:281: UnsatisfiedRequirement
workflow =
coda_nexus_file_path = PosixPath('/ess/data/coda/999999/raw/coda_tbl_999999_00021337.hdf')
detector_name = 'he3_detector_bank1'
@pytest.mark.parametrize(
"detector_name",
[
"he3_detector_bank0",
"he3_detector_bank1",
"multiblade_detector",
"ngem_detector",
"timepix3_detector",
],
)
def test_can_compute_tof(
workflow: sciline.Pipeline,
coda_nexus_file_path: Path,
detector_name: str,
) -> None:
workflow[Filename[SampleRun]] = coda_nexus_file_path
workflow[NeXusDetectorName] = detector_name
workflow[TimeOfFlightLookupTableFilename] = tbl_tof_lookup_table_no_choppers()
> result = workflow.compute(TofDetector[SampleRun])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/nexusfiles-scipp/tbl/tbl_reduction_test.py:45:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:191: in compute
return self.get(tp, **kwargs).compute(reporter=reporter)
^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self =
keys = ess.reduce.time_of_flight.types.TofDetector[ess.imaging.types.SampleRun]
def get(
self,
keys: type | Iterable[type] | "UnionType" | str, # noqa: UP037 (needed by Sphinx)
*,
scheduler: Scheduler | None = None,
handler: ErrorHandler | None = None,
max_depth: int = 4,
) -> TaskGraph:
"""
Return a TaskGraph for the given keys.
Parameters
----------
keys:
Type to compute the result for.
Can be a single type or an iterable of types.
scheduler:
Optional scheduler to use for computing the result. If not given, a
:py:class:`NaiveScheduler` is used if `dask` is not installed,
otherwise dask's threaded scheduler is used.
handler:
Handler for unsatisfied requirements. If not provided,
:py:class:`HandleAsBuildTimeException` is used, which raises an exception.
During development and debugging it can be helpful to use a handler that
raises an exception only when the graph is computed. This can be achieved
by passing :py:class:`HandleAsComputeTimeException` as the handler.
max_depth:
Maximum depth to show in the dependency tree when reporting errors.
"""
if multi := _is_multiple_keys(keys):
targets = tuple(keys) # type: ignore[arg-type]
else:
targets = (keys,)
try:
graph = to_task_graph(self, targets=targets, handler=handler) # type: ignore[arg-type]
except UnsatisfiedRequirement as e:
missing = e.args[1]
nx_graph = self.underlying_graph
if missing in nx_graph:
paths = _find_paths_to_targets(nx_graph, missing, targets)
info = _format_paths_msg(nx_graph, paths)
else:
nodes = ", ".join(map(key_name, nx_graph.nodes))
info = f'{e} Requested node not in graph. Did you mean one of: {nodes}?'
# Not raising `from e` because that includes noisy traceback of internals,
# which are not relevant to the user.
> raise type(e)(f'{info}\n\n') from None
E sciline.handler.UnsatisfiedRequirement: Missing input node 'LookupTableRelativeErrorThreshold'. Affects requested targets (via providers given in parentheses):
E 1. LookupTableRelativeErrorThreshold → (ess.reduce.time_of_flight.eto_to_tof.mask_large_uncertainty_in_lut_detector) → ErrorLimitedTofLookupTable[NXdetector] → (ess.reduce.time_of_flight.eto_to_tof.detector_time_of_flight_data) → TofDetector[SampleRun]
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:281: UnsatisfiedRequirement
workflow =
coda_nexus_file_path = PosixPath('/ess/data/coda/999999/raw/coda_tbl_999999_00021197.hdf')
detector_name = 'he3_detector_bank1'
@pytest.mark.parametrize(
"detector_name",
[
"he3_detector_bank0",
"he3_detector_bank1",
"multiblade_detector",
"ngem_detector",
"timepix3_detector",
],
)
def test_can_compute_tof(
workflow: sciline.Pipeline,
coda_nexus_file_path: Path,
detector_name: str,
) -> None:
workflow[Filename[SampleRun]] = coda_nexus_file_path
workflow[NeXusDetectorName] = detector_name
workflow[TimeOfFlightLookupTableFilename] = tbl_tof_lookup_table_no_choppers()
> result = workflow.compute(TofDetector[SampleRun])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/nexusfiles-scipp/tbl/tbl_reduction_test.py:45:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:191: in compute
return self.get(tp, **kwargs).compute(reporter=reporter)
^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self =
keys = ess.reduce.time_of_flight.types.TofDetector[ess.imaging.types.SampleRun]
def get(
self,
keys: type | Iterable[type] | "UnionType" | str, # noqa: UP037 (needed by Sphinx)
*,
scheduler: Scheduler | None = None,
handler: ErrorHandler | None = None,
max_depth: int = 4,
) -> TaskGraph:
"""
Return a TaskGraph for the given keys.
Parameters
----------
keys:
Type to compute the result for.
Can be a single type or an iterable of types.
scheduler:
Optional scheduler to use for computing the result. If not given, a
:py:class:`NaiveScheduler` is used if `dask` is not installed,
otherwise dask's threaded scheduler is used.
handler:
Handler for unsatisfied requirements. If not provided,
:py:class:`HandleAsBuildTimeException` is used, which raises an exception.
During development and debugging it can be helpful to use a handler that
raises an exception only when the graph is computed. This can be achieved
by passing :py:class:`HandleAsComputeTimeException` as the handler.
max_depth:
Maximum depth to show in the dependency tree when reporting errors.
"""
if multi := _is_multiple_keys(keys):
targets = tuple(keys) # type: ignore[arg-type]
else:
targets = (keys,)
try:
graph = to_task_graph(self, targets=targets, handler=handler) # type: ignore[arg-type]
except UnsatisfiedRequirement as e:
missing = e.args[1]
nx_graph = self.underlying_graph
if missing in nx_graph:
paths = _find_paths_to_targets(nx_graph, missing, targets)
info = _format_paths_msg(nx_graph, paths)
else:
nodes = ", ".join(map(key_name, nx_graph.nodes))
info = f'{e} Requested node not in graph. Did you mean one of: {nodes}?'
# Not raising `from e` because that includes noisy traceback of internals,
# which are not relevant to the user.
> raise type(e)(f'{info}\n\n') from None
E sciline.handler.UnsatisfiedRequirement: Missing input node 'LookupTableRelativeErrorThreshold'. Affects requested targets (via providers given in parentheses):
E 1. LookupTableRelativeErrorThreshold → (ess.reduce.time_of_flight.eto_to_tof.mask_large_uncertainty_in_lut_detector) → ErrorLimitedTofLookupTable[NXdetector] → (ess.reduce.time_of_flight.eto_to_tof.detector_time_of_flight_data) → TofDetector[SampleRun]
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:281: UnsatisfiedRequirement
workflow =
coda_nexus_file_path = PosixPath('/ess/data/coda/999999/raw/coda_tbl_999999_00021064.hdf')
detector_name = 'he3_detector_bank1'
@pytest.mark.parametrize(
"detector_name",
[
"he3_detector_bank0",
"he3_detector_bank1",
"multiblade_detector",
"ngem_detector",
"timepix3_detector",
],
)
def test_can_compute_tof(
workflow: sciline.Pipeline,
coda_nexus_file_path: Path,
detector_name: str,
) -> None:
workflow[Filename[SampleRun]] = coda_nexus_file_path
workflow[NeXusDetectorName] = detector_name
workflow[TimeOfFlightLookupTableFilename] = tbl_tof_lookup_table_no_choppers()
> result = workflow.compute(TofDetector[SampleRun])
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
tests/nexusfiles-scipp/tbl/tbl_reduction_test.py:45:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:191: in compute
return self.get(tp, **kwargs).compute(reporter=reporter)
^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self =
keys = ess.reduce.time_of_flight.types.TofDetector[ess.imaging.types.SampleRun]
def get(
self,
keys: type | Iterable[type] | "UnionType" | str, # noqa: UP037 (needed by Sphinx)
*,
scheduler: Scheduler | None = None,
handler: ErrorHandler | None = None,
max_depth: int = 4,
) -> TaskGraph:
"""
Return a TaskGraph for the given keys.
Parameters
----------
keys:
Type to compute the result for.
Can be a single type or an iterable of types.
scheduler:
Optional scheduler to use for computing the result. If not given, a
:py:class:`NaiveScheduler` is used if `dask` is not installed,
otherwise dask's threaded scheduler is used.
handler:
Handler for unsatisfied requirements. If not provided,
:py:class:`HandleAsBuildTimeException` is used, which raises an exception.
During development and debugging it can be helpful to use a handler that
raises an exception only when the graph is computed. This can be achieved
by passing :py:class:`HandleAsComputeTimeException` as the handler.
max_depth:
Maximum depth to show in the dependency tree when reporting errors.
"""
if multi := _is_multiple_keys(keys):
targets = tuple(keys) # type: ignore[arg-type]
else:
targets = (keys,)
try:
graph = to_task_graph(self, targets=targets, handler=handler) # type: ignore[arg-type]
except UnsatisfiedRequirement as e:
missing = e.args[1]
nx_graph = self.underlying_graph
if missing in nx_graph:
paths = _find_paths_to_targets(nx_graph, missing, targets)
info = _format_paths_msg(nx_graph, paths)
else:
nodes = ", ".join(map(key_name, nx_graph.nodes))
info = f'{e} Requested node not in graph. Did you mean one of: {nodes}?'
# Not raising `from e` because that includes noisy traceback of internals,
# which are not relevant to the user.
> raise type(e)(f'{info}\n\n') from None
E sciline.handler.UnsatisfiedRequirement: Missing input node 'LookupTableRelativeErrorThreshold'. Affects requested targets (via providers given in parentheses):
E 1. LookupTableRelativeErrorThreshold → (ess.reduce.time_of_flight.eto_to_tof.mask_large_uncertainty_in_lut_detector) → ErrorLimitedTofLookupTable[NXdetector] → (ess.reduce.time_of_flight.eto_to_tof.detector_time_of_flight_data) → TofDetector[SampleRun]
.tox/nexusfiles-scipp-tbl/lib/python3.12/site-packages/sciline/pipeline.py:281: UnsatisfiedRequirement