View job log here
nbclient.exceptions.CellTimeoutError: A cell timed out while it was being executed, after 120 seconds.
The message was: Cell execution timed out.
Here is a preview of the cell contents:
-------------------
['chop_index = 0', "select_chop = widgets.Dropdown(options=list(f'{chop.name}' for chop in beer.modes[index].choppers),", " value=f'{beer.modes[index].choppers[chop_index].name}', ", " description='Chopper: ')", "save_chop_button = widgets.Button(description='Save to PDF')"]
...
["show_blocked.observe(show_blocked_on_change, names='value')", 'save_chop_button.on_click(save_chop_on_click)', 'dat_chop_button.on_click(dat_chop_on_click)', 'for check in c_pulses:', " check.observe(c_pulses_on_change, names='value')"]
-------------------
.tox/codeshelf-beer/lib/python3.12/site-packages/nbclient/client.py:856: CellTimeoutError
Full output
self = <nbconvert.preprocessors.execute.ExecutePreprocessor object at 0x7f2922897020>
msg_id = 'a2543fcc-3912d78a58079685f3e659db_1530967_20'
cell = {'cell_type': 'code', 'execution_count': None, 'id': '19', 'metadata': {'execution': {}}, 'outputs': [], 'source': 'ch...op_button.on_click(dat_chop_on_click)\nfor check in c_pulses:\n check.observe(c_pulses_on_change, names=\'value\')'}
timeout = 120
task_poll_output_msg = <Task pending name='Task-56' coro=<NotebookClient._async_poll_output_msg() running at /home/gitlab-runner/builds/sr_sr.../7/dmsc-nightly/dmsc-nightly/.tox/codeshelf-beer/lib/python3.12/site-packages/zmq/_future.py:416, Task.task_wakeup()]>>
task_poll_kernel_alive = <Task cancelled name='Task-55' coro=<NotebookClient._async_poll_kernel_alive() done, defined at /home/gitlab-runner/builds/sr_srNBdt/7/dmsc-nightly/dmsc-nightly/.tox/codeshelf-beer/lib/python3.12/site-packages/nbclient/client.py:821>>
async def _async_poll_for_reply(
self,
msg_id: str,
cell: NotebookNode,
timeout: int | None,
task_poll_output_msg: asyncio.Future[t.Any],
task_poll_kernel_alive: asyncio.Future[t.Any],
) -> dict[str, t.Any]:
msg: dict[str, t.Any]
assert self.kc is not None
new_timeout: float | None = None
if timeout is not None:
deadline = monotonic() + timeout
new_timeout = float(timeout)
error_on_timeout_execute_reply = None
while True:
try:
if error_on_timeout_execute_reply:
msg = error_on_timeout_execute_reply
msg["parent_header"] = {"msg_id": msg_id}
else:
> msg = await ensure_async(self.kc.shell_channel.get_msg(timeout=new_timeout))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
.tox/codeshelf-beer/lib/python3.12/site-packages/nbclient/client.py:782:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
.tox/codeshelf-beer/lib/python3.12/site-packages/jupyter_core/utils/__init__.py:214: in ensure_async
result = await obj
^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <jupyter_client.channels.AsyncZMQSocketChannel object at 0x7f2922893800>
timeout = 120.0
async def get_msg( # type:ignore[override]
self, timeout: float | None = None
) -> t.Dict[str, t.Any]:
"""Gets a message if there is one that is ready."""
assert self.socket is not None
timeout_ms = None if timeout is None else int(timeout * 1000) # seconds to ms
ready = await self.socket.poll(timeout_ms)
if ready:
res = await self._recv()
return res
else:
> raise Empty
E _queue.Empty
.tox/codeshelf-beer/lib/python3.12/site-packages/jupyter_client/channels.py:330: Empty
During handling of the above exception, another exception occurred:
notebook = PosixPath('/tmp/pytest-of-gitlab-runner/pytest-476/codeshelf/src/beer/notebooks/commissioning/BEER-TOF.ipynb')
run_codeshelf_notebook = <function _run_codeshelf_notebook at 0x7f29228e40e0>
tmp_path = PosixPath('/tmp/pytest-of-gitlab-runner/pytest-476/test_run_notebooks_commissioni0')
def test_run_notebooks(
notebook: Path, run_codeshelf_notebook: Callable, tmp_path: Path
):
> run_codeshelf_notebook(notebook_path=notebook, run_path=tmp_path)
tests/codeshelf/codeshelf_test.py:10:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
tests/codeshelf/conftest.py:131: in _run_codeshelf_notebook
ep.preprocess(nb, {"metadata": {"path": run_path}})
.tox/codeshelf-beer/lib/python3.12/site-packages/nbconvert/preprocessors/execute.py:103: in preprocess
self.preprocess_cell(cell, resources, index)
.tox/codeshelf-beer/lib/python3.12/site-packages/nbconvert/preprocessors/execute.py:124: in preprocess_cell
cell = self.execute_cell(cell, index, store_history=True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
.tox/codeshelf-beer/lib/python3.12/site-packages/jupyter_core/utils/__init__.py:165: in wrapped
return loop.run_until_complete(inner)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/opt/miniforge/lib/python3.12/asyncio/base_events.py:687: in run_until_complete
return future.result()
^^^^^^^^^^^^^^^
.tox/codeshelf-beer/lib/python3.12/site-packages/nbclient/client.py:1005: in async_execute_cell
exec_reply = await self.task_poll_for_reply
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
.tox/codeshelf-beer/lib/python3.12/site-packages/nbclient/client.py:806: in _async_poll_for_reply
error_on_timeout_execute_reply = await self._async_handle_timeout(timeout, cell)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <nbconvert.preprocessors.execute.ExecutePreprocessor object at 0x7f2922897020>
timeout = 120
cell = {'cell_type': 'code', 'execution_count': None, 'id': '19', 'metadata': {'execution': {}}, 'outputs': [], 'source': 'ch...op_button.on_click(dat_chop_on_click)\nfor check in c_pulses:\n check.observe(c_pulses_on_change, names=\'value\')'}
async def _async_handle_timeout(
self, timeout: int, cell: NotebookNode | None = None
) -> None | dict[str, t.Any]:
self.log.error("Timeout waiting for execute reply (%is)." % timeout)
if self.interrupt_on_timeout:
self.log.error("Interrupting kernel")
assert self.km is not None
await ensure_async(self.km.interrupt_kernel())
if self.error_on_timeout:
execute_reply = {"content": {**self.error_on_timeout, "status": "error"}}
return execute_reply
return None
else:
assert cell is not None
> raise CellTimeoutError.error_from_timeout_and_cell(
"Cell execution timed out", timeout, cell
)
E nbclient.exceptions.CellTimeoutError: A cell timed out while it was being executed, after 120 seconds.
E The message was: Cell execution timed out.
E Here is a preview of the cell contents:
E -------------------
E ['chop_index = 0', "select_chop = widgets.Dropdown(options=list(f'{chop.name}' for chop in beer.modes[index].choppers),", " value=f'{beer.modes[index].choppers[chop_index].name}', ", " description='Chopper: ')", "save_chop_button = widgets.Button(description='Save to PDF')"]
E ...
E ["show_blocked.observe(show_blocked_on_change, names='value')", 'save_chop_button.on_click(save_chop_on_click)', 'dat_chop_button.on_click(dat_chop_on_click)', 'for check in c_pulses:', " check.observe(c_pulses_on_change, names='value')"]
E -------------------
.tox/codeshelf-beer/lib/python3.12/site-packages/nbclient/client.py:856: CellTimeoutError
